Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f15
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0355 - 12885898-12886290,12886351-12886644,12886744-128868...    30   1.8  

>05_03_0355 -
           12885898-12886290,12886351-12886644,12886744-12886871,
           12886952-12888482
          Length = 781

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
 Frame = -3

Query: 488 GPS*RSFLGHFHLVQNVLHFRPG-LVALVDEHDLVDGRIPKVHSSGYIVAIVR*VDHIHL 312
           GPS + +LG  H VQ   HF  G L++   +H+ V  R+ +  + G +  I     H   
Sbjct: 290 GPSKQFYLGTGHKVQIKFHFGAGQLLSWAGQHERVKNRLGQPPTLGILSNI---AGHSSP 346

Query: 311 IR*GPSYTQKQ*SYTERRCEHQR 243
           +R      Q+  S TE+  E ++
Sbjct: 347 VRTYTHILQRSSSETEQATESEQ 369


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,636,687
Number of Sequences: 37544
Number of extensions: 366275
Number of successful extensions: 879
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 879
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)