Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26f14
(740 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 77 3e-15
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi... 62 1e-10
SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 56 4e-09
SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces po... 54 2e-08
SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase |Schizosac... 54 3e-08
SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein Mc... 32 0.075
SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl modifica... 29 0.92
SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces ... 26 4.9
SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1 |Sc... 26 6.5
SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ... 25 8.6
SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ... 25 8.6
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 8.6
SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces p... 25 8.6
SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyce... 25 8.6
>SPACUNK4.10 |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 334
Score = 77.0 bits (181), Expect = 3e-15
Identities = 40/127 (31%), Positives = 65/127 (51%)
Frame = +2
Query: 359 EILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRR 538
EI+D +K + + AGY + ARGIQ+++ P + A A+V + L+L A R
Sbjct: 72 EIIDNLPPSVKFICHLGAGYETVDVAACTARGIQVSHVPKAVDDATADVGIFLMLGALRG 131
Query: 539 FTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVARFIYSGHR 718
F + + ++ + W D T+GI+GLGGIG+ + KR FD+ + +Y
Sbjct: 132 FNQGIFELHKNNWNANCKP--SHDPEGKTLGILGLGGIGKTMAKRARAFDM-KIVYHNRT 188
Query: 719 EKPEAKA 739
PE +A
Sbjct: 189 PLPEEEA 195
>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 466
Score = 61.7 bits (143), Expect = 1e-10
Identities = 39/129 (30%), Positives = 71/129 (55%), Gaps = 2/129 (1%)
Frame = +2
Query: 275 STLGREEILKLIPGCSALVWISNLPITNEILDAAGAQLKIVSTVSAGYNHCNPEELRARG 454
+++ +++++ I G A+ S +T +L+AA + L ++ G N + + RG
Sbjct: 84 TSMSEDDLVEKIKGVHAIGIRSKTRLTRRVLEAADS-LIVIGCFCIGTNQVDLDFAAERG 142
Query: 455 IQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVRRGEWEIGFDKVLG--QDLRDSTV 628
I + N+P S +VAE+ +G I+S +R+ + ++ RGEW +KV ++R T+
Sbjct: 143 IAVFNSPYANSRSVAELVIGYIISLARQVGDRSLELHRGEW----NKVSSGCWEIRGKTL 198
Query: 629 GIIGLGGIG 655
GIIG G IG
Sbjct: 199 GIIGYGHIG 207
>SPAC186.07c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 56.4 bits (130), Expect = 4e-09
Identities = 33/100 (33%), Positives = 54/100 (54%), Gaps = 1/100 (1%)
Frame = +2
Query: 389 KIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVRR 568
K+++ AG+N+ + + GI + P AVAE +GL+LS +R+ +VR
Sbjct: 70 KLIALRCAGFNNVDLKAAADNGITVVRVPAYSPYAVAEYTIGLLLSLNRKIHRAYVRVRE 129
Query: 569 GEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLS-GF 685
++ + + +LG DL T+G++G G IG V K L GF
Sbjct: 130 DDFNL--NGLLGHDLHGKTIGLLGTGRIGGLVAKCLKLGF 167
>SPAC186.02c |||hydroxyacid dehydrogenase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 332
Score = 54.4 bits (125), Expect = 2e-08
Identities = 33/95 (34%), Positives = 51/95 (53%)
Frame = +2
Query: 386 LKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRFTENLDQVR 565
+K+V+ GYN+ N + I + + P+ AV+E VGL+LS +R+ +VR
Sbjct: 69 VKLVALRCGGYNNVNLKAASEYKITVVHVPSYSPFAVSEFTVGLLLSLNRKIHRAYVRVR 128
Query: 566 RGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVK 670
++ I +LG D+ TVG+IG G IG V K
Sbjct: 129 EDDFNI--VGLLGCDIHGKTVGVIGTGKIGSNVAK 161
>SPBC1773.17c ||SPBP26C9.01c|hydroxyacid dehydrogenase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 340
Score = 53.6 bits (123), Expect = 3e-08
Identities = 32/110 (29%), Positives = 52/110 (47%)
Frame = +2
Query: 347 PITNEILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILS 526
P T E+L K+ T +AGYN+ + + G+ + NTPN + A + + L +
Sbjct: 71 PFTEEMLGPLLPTCKLFVTGAAGYNNVDVDWATRNGVYVANTPNGPTEGTANMNLMLFMC 130
Query: 527 ASRRFTENLDQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRL 676
R E +R G+W L D VGIIG+G IG++ +++
Sbjct: 131 TLRGAREAEQSLRLGKWRQNLS--LTDDPYGKRVGIIGMGAIGKSFAQKI 178
>SPAC13A11.03 |mcp7|mug32|meiosis specific coiled-coil protein
Mcp7|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 32.3 bits (70), Expect = 0.075
Identities = 13/28 (46%), Positives = 19/28 (67%)
Frame = +2
Query: 353 TNEILDAAGAQLKIVSTVSAGYNHCNPE 436
T E+L A ++LK++ T + NHCNPE
Sbjct: 125 TLELLHAKESELKLLKTQLSNLNHCNPE 152
>SPBC30B4.06c |||tRNA uridine 5-carboxymethylaminomethyl
modification enzyme|Schizosaccharomyces pombe|chr
2|||Manual
Length = 666
Score = 28.7 bits (61), Expect = 0.92
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = -3
Query: 621 LSRRSCPRTLSKPISHSPLRT*SRFSVNLLEADSMSP 511
L +RSC RT + ++H +R F+ ++L D +SP
Sbjct: 255 LPQRSCYRTYTTELTHEIVRKNLAFAPHMLAGDILSP 291
>SPAC1A6.10 ||SPAC30D11.15c|Moeb/ThiF domain|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 485
Score = 26.2 bits (55), Expect = 4.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
Frame = +2
Query: 539 FTENL--DQVRRGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLS 679
+ ENL +Q+ R G D + + LR+S V ++G GG+G V+ L+
Sbjct: 100 YDENLIREQLARNYAFFGEDGM--ERLRNSFVIVVGCGGVGSWVINMLA 146
>SPAC1834.02 |aro1||pentafunctional aromatic polypeptide Aro1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1573
Score = 25.8 bits (54), Expect = 6.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +2
Query: 566 RGEWEIGFDKVLGQDLRDSTVGIIGLGGIGQAVVKRLSGFDVAR 697
RG ++ + + G LRD+ +IG GG +A + L V+R
Sbjct: 1397 RGIYDTFANALDGVSLRDTNGLVIGAGGTSRAAIYSLHRLGVSR 1440
>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1502
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/49 (34%), Positives = 24/49 (48%)
Frame = +2
Query: 179 VSSNDYPPTALKLLEDHFTVLQSRYLNFGQEGSTLGREEILKLIPGCSA 325
+SSND P T L + + F+ LQ +G E G + LI C+A
Sbjct: 929 LSSNDQPSTGLYPILNMFSRLQYAQ-PYGNENEWTGLSQFEPLIFKCTA 976
>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 8.6
Identities = 17/62 (27%), Positives = 27/62 (43%)
Frame = +2
Query: 362 ILDAAGAQLKIVSTVSAGYNHCNPEELRARGIQLTNTPNVLSPAVAEVAVGLILSASRRF 541
+L A IVS + G + C + + + NT LSP AE I+S+ F
Sbjct: 55 LLKARRMTATIVSNHNVGCSCCYFRQYSTKQFRDLNTSEALSPCKAEPIPYKIMSSMSNF 114
Query: 542 TE 547
++
Sbjct: 115 SD 116
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = -3
Query: 621 LSRRSCPRTLSKPISHSPLRT*SRFSVNLLEADSMSPTATSATA 490
+ ++ P+T SKP SH+P+ + S P+A+ T+
Sbjct: 126 VKKKPIPKTKSKPTSHAPVSDNVSSTFRNATRKSKKPSASKDTS 169
>SPAC11E3.05 |||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1323
Score = 25.4 bits (53), Expect = 8.6
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +2
Query: 527 ASRRFTENLDQVRRGEWEIGFDKVLGQDLRD 619
A RF + DQV+ W + V +DLRD
Sbjct: 496 AVHRFAGHTDQVKEFLWRCRGEDVFDRDLRD 526
>SPCC285.03 |||ATP-dependent RNA helicase Dbp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 8.6
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Frame = +2
Query: 389 KIVSTVSAG-YNHCNPEELRARGIQLTNTPNVLS 487
KI+S + G N +L ARGI + NT NV++
Sbjct: 478 KIISRFATGDLNLLVCSDLMARGIDVANTQNVIN 511
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,911
Number of Sequences: 5004
Number of extensions: 62701
Number of successful extensions: 205
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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