Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26f12
(651 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069 30 1.8
02_05_0046 - 25398412-25398594,25399022-25399060,25399896-254003... 29 2.4
02_02_0640 - 12528075-12528363,12531326-12532311 28 5.6
07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371 28 7.4
07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362 28 7.4
10_08_1023 - 22341815-22342042,22342179-22342247,22342717-223428... 27 9.8
07_03_1531 + 27515829-27516046,27516238-27516451,27517223-275173... 27 9.8
07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874 27 9.8
02_02_0155 + 7272563-7272630,7272934-7273031,7273491-7274057,727... 27 9.8
>10_03_0028 + 7184825-7184837,7185449-7185771,7186052-7186069
Length = 117
Score = 29.9 bits (64), Expect = 1.8
Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 1/78 (1%)
Frame = +1
Query: 61 IDVGSGTETGSVMASTEWPITRTKRNFPFQL*DS-KKTPKISGPCARKRREIGNSSAAKR 237
++V TE + A++ + T NF F L TP + C K ++ SA
Sbjct: 8 VEVACETEGPNTQANSVFTATDEFGNFTFHLPSRLHATPSLENACVVKVLQLPPDSACGL 67
Query: 238 RKRYIVLLSVRPSPNFST 291
R R +RPS + S+
Sbjct: 68 RHRPAASYRIRPSSSLSS 85
>02_05_0046 -
25398412-25398594,25399022-25399060,25399896-25400360,
25400758-25400816,25400920-25401748,25402554-25402898,
25402973-25403435,25403537-25403640,25403692-25403901,
25404933-25405088,25405774-25406052,25406237-25406986,
25407141-25407232,25407977-25408361,25408672-25408752,
25409196-25409354,25409399-25409506,25409604-25409666,
25409764-25409835,25409932-25410366
Length = 1758
Score = 29.5 bits (63), Expect = 2.4
Identities = 11/20 (55%), Positives = 16/20 (80%)
Frame = +1
Query: 187 PCARKRREIGNSSAAKRRKR 246
P ARKRR++ + S +K+RKR
Sbjct: 879 PAARKRRKVNSGSTSKKRKR 898
>02_02_0640 - 12528075-12528363,12531326-12532311
Length = 424
Score = 28.3 bits (60), Expect = 5.6
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -2
Query: 263 ERSTI*RFLLFAAEEFPISLLFLAQGPDIFGVFFESHSW 147
ER + + +AE+ ++ +F+ G DIF F S+SW
Sbjct: 299 ERERLGPVAVISAEDGRVTEVFMLDGHDIFRYNFSSNSW 337
>07_03_1497 - 26990647-26991531,26991609-26991967,26992302-26992371
Length = 437
Score = 27.9 bits (59), Expect = 7.4
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Frame = +2
Query: 125 GRSAISLSSCEIQRKHQRYLGLARER-EGRLETPLLRREESVISCFFLSDLRRISALYRR 301
GRS SSC+ Q+KH G R R E +P + ++ + F S ++ +S +
Sbjct: 210 GRSLDVASSCKRQKKHSN--GTKRSRTESNFPSPRMLKD---VHSHFQSSIQHVSTMVTA 264
Query: 302 ME 307
ME
Sbjct: 265 ME 266
>07_03_1457 - 26674128-26674783,26675741-26675962,26676065-26676362
Length = 391
Score = 27.9 bits (59), Expect = 7.4
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 3/37 (8%)
Frame = +3
Query: 252 RASFCQTFAEFQHYTGEW---KLILGYLLIALSFPFW 353
R+ + +TF F+ TG W +LI+ +++ L FP+W
Sbjct: 74 RSPYGETF--FRRPTGRWSDGRLIVDFIVERLGFPYW 108
>10_08_1023 -
22341815-22342042,22342179-22342247,22342717-22342840,
22343193-22343317,22343815-22344276,22344357-22344700,
22345061-22345406,22345492-22345941,22346760-22347051,
22347171-22347515,22347611-22347834,22348072-22348563,
22348664-22349056,22349601-22349741,22349845-22350207,
22350494-22352683,22353298-22353360,22353434-22353535,
22353672-22354027,22354326-22354413,22354517-22354750,
22355508-22355975
Length = 2632
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/40 (32%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = -2
Query: 194 AQGPDIFGVFFE-SHSWKGKLRFVLVIGHSVDAITDPVSV 78
A+ P+ +F HSW+G+ R +L I S DP ++
Sbjct: 37 AEEPEYLARYFVVKHSWRGRYRRILCIASSGLVTLDPATL 76
>07_03_1531 +
27515829-27516046,27516238-27516451,27517223-27517327,
27517432-27517830
Length = 311
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 42 LVRSVHNRCRIGNRDWVGYGVNGMANYKDEAQFP 143
LV+S N GNRDW+ VN +Y+++ P
Sbjct: 47 LVQSAVNSVPDGNRDWIKIHVNA-GSYEEKVTIP 79
>07_01_1167 + 11030200-11031165,11031273-11031407,11031509-11031874
Length = 488
Score = 27.5 bits (58), Expect = 9.8
Identities = 15/42 (35%), Positives = 20/42 (47%)
Frame = -2
Query: 602 ILCHKLHFKLLTKRNYISLLRRIVVPKHFLLLPSVVIIVPFR 477
I C LH K + RNY K F+L SV+ ++ FR
Sbjct: 388 IECLDLHLKEIVVRNYRGQKSHAAFAKFFVLNASVLKVMTFR 429
>02_02_0155 +
7272563-7272630,7272934-7273031,7273491-7274057,
7275121-7276085,7276201-7276388,7276497-7276938
Length = 775
Score = 27.5 bits (58), Expect = 9.8
Identities = 18/63 (28%), Positives = 32/63 (50%)
Frame = +3
Query: 258 SFCQTFAEFQHYTGEWKLILGYLLIALSFPFWAMIFNHYYVYEPLPESLSKESQKAQLRR 437
S+C F + +W+++LG L I F F IF Y+ E P L + + A+ ++
Sbjct: 177 SYCMVFGMSLLPSPDWRIMLGVLAIPSLFFFGLTIF---YLPES-PRWLVSKGRMAEAKK 232
Query: 438 MLE 446
+L+
Sbjct: 233 VLQ 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,458,452
Number of Sequences: 37544
Number of extensions: 376166
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1061
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1081
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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