Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f08
         (624 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          22   5.6  
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.6  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    22   5.6  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   7.4  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    21   7.4  
AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  
AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein...    21   9.8  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/33 (30%), Positives = 19/33 (57%)
 Frame = +1

Query: 517 TNNHRSSHSTSRDSLTLRATNVPISKLPSSPRS 615
           TN   + ++ +   +++  T VPI+ LP+S  S
Sbjct: 833 TNVTTTINTPTTSVISMSGTTVPITSLPASSTS 865


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 387 EMWVLYGTAHQGRSW 343
           E WV+Y    + RSW
Sbjct: 33  EKWVVYNNIKRKRSW 47


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = -3

Query: 205 FGITSGTTWLASKDFATVDIALVKTLKLTIVA 110
           +GI++G    A +  A   +ALV TL + IV+
Sbjct: 384 YGISAGLNRTAGQQAAYQLLALVITLGIAIVS 415


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = -1

Query: 387 EMWVLYGTAHQGRSW 343
           E WV+Y    + RSW
Sbjct: 154 EKWVVYNNIKRKRSW 168


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -3

Query: 229 TCNKAAGAFGITSGTTW 179
           + NKA+ AFGI S T +
Sbjct: 483 SANKASKAFGIPSSTLY 499



 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = -3

Query: 220 KAAGAFGITSGTTW 179
           KA+  FGI S T W
Sbjct: 432 KASATFGIPSTTLW 445


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/43 (23%), Positives = 19/43 (44%)
 Frame = +1

Query: 436 TPAKLCPSTWALDLRKRQACTDTCSSCTNNHRSSHSTSRDSLT 564
           +PA+ C ST  +  R  Q         T+N+ ++   +   +T
Sbjct: 746 SPAEQCASTTTITARSPQGSQGLLQCATSNYSTTRWPATSVIT 788


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -2

Query: 344 GQSVVLSWLRVPFH*RLVFHLSWSQLITFFN 252
           G S+   WLR      +VF L    L+  FN
Sbjct: 583 GSSIKAMWLRRALASLMVFSLGLFLLLDMFN 613


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 294 EPSVKWDAEPGQYYTLAMTDPDAPSRKEPTF 386
           +PS+     PG +Y  A +  D P  + P +
Sbjct: 53  DPSLLRQGVPGHHYGAAGSQQDMPYPRFPPY 83


>AY273778-1|AAP33487.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 457 WDKVSPEFTSLP 422
           W K  P FTSLP
Sbjct: 248 WAKHIPHFTSLP 259


>AF263459-1|AAF73057.1|  427|Apis mellifera ultraspiracle protein
           protein.
          Length = 427

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -3

Query: 457 WDKVSPEFTSLP 422
           W K  P FTSLP
Sbjct: 248 WAKHIPHFTSLP 259


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,044
Number of Sequences: 438
Number of extensions: 4359
Number of successful extensions: 12
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)