Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f04
         (607 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|c...    27   1.6  
SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pm...    26   4.9  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.5  
SPAC21E11.06 |tif224||translation initiation factor eIF2B delta ...    25   8.6  
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22...    25   8.6  

>SPAC6F6.13c |||DUF726 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 778

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = +2

Query: 143 VEFESYKPKQKKLAEKDEKNLPRTETGQYSKKDLELKKIRHEVVK 277
           +E E  + KQK+L EK      R+ + + S    + KKIR E+ K
Sbjct: 720 IEAEECQNKQKELIEKSLMQKGRSLSPKKSNAFFDSKKIREELKK 764


>SPBC1105.06 |pmc4|med4|RNA polymerase II holoenzyme component Pmc4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 15/57 (26%), Positives = 28/57 (49%)
 Frame = +2

Query: 146 EFESYKPKQKKLAEKDEKNLPRTETGQYSKKDLELKKIRHEVVKFGMSGFDPTKKEE 316
           E E+     K + EK + N P + T    +++ E++   ++ V  G   FDP  +E+
Sbjct: 182 ETETEIDANKAVEEKTKMNYPASPTFTTQEENKEVESPANKDVFAGFDLFDPEMEED 238


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = +2

Query: 485  PANNDVGHFLSGYGK 529
            P NN  G FL G+GK
Sbjct: 2819 PKNNSAGKFLKGFGK 2833


>SPAC21E11.06 |tif224||translation initiation factor eIF2B delta
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 10/31 (32%), Positives = 19/31 (61%)
 Frame = +2

Query: 167 KQKKLAEKDEKNLPRTETGQYSKKDLELKKI 259
           +QKK ++++ +N P T+     KK  E K++
Sbjct: 90  QQKKASKQNPQNSPETDANLQEKKIFEEKQV 120


>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
            Snf22|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1680

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 140  VVEFESYKPKQKKLAEKDEKNLPRTETGQ 226
            ++EFE + P  KK+A K    L +T   Q
Sbjct: 934  IMEFEKWAPSVKKIAYKGPPQLRKTLQSQ 962


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,824,790
Number of Sequences: 5004
Number of extensions: 29485
Number of successful extensions: 96
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 266270664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)