Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26f01
         (727 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF039041-3|AAB94192.1|  183|Caenorhabditis elegans Hypothetical ...    87   2e-17
AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical ...    30   1.9  
AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical ...    29   3.4  
AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical pr...    28   5.9  
AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical ...    28   5.9  
AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical ...    28   5.9  
Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical pr...    28   7.8  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    28   7.8  
U00049-6|AAM22030.1|  711|Caenorhabditis elegans Hypothetical pr...    28   7.8  
AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical ...    28   7.8  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     28   7.8  

>AF039041-3|AAB94192.1|  183|Caenorhabditis elegans Hypothetical
           protein W03F8.4 protein.
          Length = 183

 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 53/165 (32%), Positives = 88/165 (53%), Gaps = 3/165 (1%)
 Frame = +3

Query: 99  KTTLKIYLYKNVQNIEEIRNHITNGEWNCAIIKPSLILDPFQXXXXXXXXXXXXKFSTMV 278
           + T ++ L+K+V+N  E+   +  G+ + A+I+  L+L+PF               + M 
Sbjct: 19  RKTCRVCLFKDVKNAAELSQQLKEGKIDAALIRAELVLEPFVLLAAANRAVHQSAHNRMS 78

Query: 279 TRTVFGEILYNLSLTKNITQSLSKFGI-EKSHDLLVCFLVTNEIDCRPEILPEIKGEQCS 455
            R++  E++Y+LS ++NIT SL  FGI E S  ++      +      ++   IKG    
Sbjct: 79  CRSLAAELVYSLSPSRNITDSLVTFGIAEHSTAIIAAIFDDDSGKAMKKLAKAIKGTPVP 138

Query: 456 ITE-LCNFTNLKDVKSVYKLNN-LKSDEGLLDIIVSRMTTKNFVS 584
           + E L  F N+  +K VY++ N    +EGL D IVSRM +K+FVS
Sbjct: 139 LMEGLPKFANVNMIKKVYQVGNPAFVEEGLSDHIVSRMVSKDFVS 183


>AC006696-3|AAF39984.1|  391|Caenorhabditis elegans Hypothetical
           protein W08E12.7 protein.
          Length = 391

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 309 NLSLTKNITQSLSKFGIEKSHDLLVCFLVTNEIDCRPEIL 428
           N ++TKNI ++ ++FG+    ++L   L  NEID   +I+
Sbjct: 174 NTTITKNIDKTAAEFGLTPIENMLSHQLERNEIDGEKKII 213


>AC024757-1|AAF59450.3|  490|Caenorhabditis elegans Hypothetical
           protein Y37E11AL.5 protein.
          Length = 490

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
 Frame = -3

Query: 464 FCNRTLFTFYFGKYFRSAIYFICN*EAYE*IMAFFYSKLA*TLCYIFGKR*IVQ-NFSEH 288
           FC+  L  F+F ++   AI+F C  + +  ++AFF++       Y+F  R ++Q  F  +
Sbjct: 351 FCS-ALLLFFFREHSPMAIFFFCLFQFFHVVIAFFFAS------YLFRLRFLLQRGFDSN 403

Query: 287 SSRNHCTKFRCDNCSVRRHSHLK 219
            S +   + R  + ++  H   K
Sbjct: 404 DSTDSLERKRDISRALLEHVDTK 426


>AF040643-1|AAB94960.1|  998|Caenorhabditis elegans Hypothetical
           protein F14D2.6 protein.
          Length = 998

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 18/56 (32%), Positives = 31/56 (55%)
 Frame = +3

Query: 477 TNLKDVKSVYKLNNLKSDEGLLDIIVSRMTTKNFVSY*N*VMQFLLPTPQFPFSPT 644
           TN+ D  S+  L+ LK+  G+L+I  + +   +F+      ++ LL TP+  FS T
Sbjct: 672 TNVSDFTSLKPLSQLKTLNGMLEIYETDLPNISFLGN----LKSLLGTPRLEFSYT 723


>Z82284-7|CAE11307.1|  343|Caenorhabditis elegans Hypothetical
           protein T27E7.8 protein.
          Length = 343

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 19/66 (28%), Positives = 27/66 (40%)
 Frame = +3

Query: 477 TNLKDVKSVYKLNNLKSDEGLLDIIVSRMTTKNFVSY*N*VMQFLLPTPQFPFSPTYADS 656
           TN   V  +    N  S        +SR   KNF  + N    FL+ TP F F P   ++
Sbjct: 118 TNAMLVSIIVLFENRSSSISFNKFCISRQKYKNFWIFSNCGSSFLVLTPPFFFLPDQEEA 177

Query: 657 LERLFQ 674
             R+ +
Sbjct: 178 KIRILK 183


>AL110477-5|CAB54329.1|  314|Caenorhabditis elegans Hypothetical
           protein Y113G7B.7 protein.
          Length = 314

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/42 (35%), Positives = 25/42 (59%)
 Frame = +3

Query: 414 RPEILPEIKGEQCSITELCNFTNLKDVKSVYKLNNLKSDEGL 539
           +P +L EI G +C    L NFTN+ +V ++++L   K  + L
Sbjct: 178 KPRVLEEI-GIRC----LANFTNISEVSNLFELEQWKKAKSL 214


>AF016688-5|AAB66073.1|  666|Caenorhabditis elegans Hypothetical
           protein F18A12.7 protein.
          Length = 666

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 14/49 (28%), Positives = 26/49 (53%)
 Frame = -1

Query: 151 ISSMFCTFL*RYIFNVVFVSGSKTQVKCSSFIL*LSIV*KNLAQTLLIS 5
           +S ++C F   YI   VF++G   + K +  +   S+     A+T+L+S
Sbjct: 299 LSRLYCEFASNYIIGYVFITGGNARSKVTRGVFPSSVA----AETILVS 343


>Z99276-2|CAB16482.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 388 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 293
           K +S   L   PN+++LC  F+    +Y+I+P
Sbjct: 97  KESSNLRLMHHPNIIELCECFVYERSIYQITP 128


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 634 KGNWGVGSKNCMT*F**ETKFFVVILLTIISNNPSS 527
           K NW     +C +        F ++LLT ISNNP S
Sbjct: 532 KANWTTTGVSCPSEIFTSPNTFEILLLTSISNNPIS 567


>U00049-6|AAM22030.1|  711|Caenorhabditis elegans Hypothetical
           protein C18F10.2 protein.
          Length = 711

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 12/40 (30%), Positives = 20/40 (50%)
 Frame = -3

Query: 311 IVQNFSEHSSRNHCTKFRCDNCSVRRHSHLKWI*DQARLN 192
           I Q F EH       K RC+NC+   +  +  + DQ +++
Sbjct: 285 IGQFFGEHPRSKRTPKPRCENCTEEEYEDVTPLSDQVKMD 324


>AL023843-2|CAA19523.1|  388|Caenorhabditis elegans Hypothetical
           protein Y52D3.1a protein.
          Length = 388

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/32 (34%), Positives = 19/32 (59%)
 Frame = -1

Query: 388 KHTSKSWLFSIPNLLKLCVIFLVSDKLYKISP 293
           K +S   L   PN+++LC  F+    +Y+I+P
Sbjct: 97  KESSNLRLMHHPNIIELCECFVYERSIYQITP 128


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 634 KGNWGVGSKNCMT*F**ETKFFVVILLTIISNNPSS 527
           K NW     +C +        F ++LLT ISNNP S
Sbjct: 534 KANWTTTGVSCPSEIFTSPNTFEILLLTSISNNPIS 569


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,590,439
Number of Sequences: 27780
Number of extensions: 325726
Number of successful extensions: 924
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 897
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 922
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)