Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e23
         (708 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0105 - 20861130-20861384,20861472-20862262,20862364-208626...    31   1.2  
03_05_0625 - 26225201-26225879,26226706-26227553                       29   2.7  
01_07_0228 - 42154400-42154498,42155120-42155196,42156341-421564...    29   3.6  
01_06_1760 - 39697079-39697162,39697280-39697340,39697415-396974...    29   3.6  
08_02_1465 - 27319377-27319405,27319936-27320101,27320336-273204...    28   6.3  
11_01_0650 - 5265106-5265305,5265972-5266049,5266391-5266544,526...    28   8.4  
06_03_0588 + 22567820-22570802,22570917-22571269                       28   8.4  

>03_05_0105 -
           20861130-20861384,20861472-20862262,20862364-20862618,
           20862713-20862827,20862959-20863011,20863113-20863373,
           20863699-20863749,20863863-20864114,20864504-20864726,
           20865317-20865460
          Length = 799

 Score = 30.7 bits (66), Expect = 1.2
 Identities = 26/73 (35%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
 Frame = -1

Query: 603 ITHFQTLIVF-RVKDFEINSVRFPRGHKLPTVLMVVLVAICVSITI---LV*ILAQSHVQ 436
           ++H Q+L  F RVK     S RFP    +P V  ++ VA CV +T+      I+ ++H  
Sbjct: 396 VSHLQSLSCFPRVKILH-TSKRFPGQLYIPGVNFLLCVAACV-VTVSFKTTVIIGKAHEI 453

Query: 435 IVMLVNNFTVLLI 397
            V+LV   T LL+
Sbjct: 454 CVILVMIITTLLM 466


>03_05_0625 - 26225201-26225879,26226706-26227553
          Length = 508

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 19/65 (29%), Positives = 29/65 (44%), Gaps = 5/65 (7%)
 Frame = +1

Query: 331 WTTGHQNIVQSCFPLEFR----LILD-DKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGD 495
           W   H+N + S FP + R    L+ D DKKD     K  D  +      D + D D  G+
Sbjct: 341 WVPKHENNLDSVFPRQTRRRWMLLQDLDKKDSTTFRKEHDEEIDFEWSSDGDDDSDHRGN 400

Query: 496 EDDHK 510
             +++
Sbjct: 401 VPEYR 405


>01_07_0228 -
           42154400-42154498,42155120-42155196,42156341-42156425,
           42156511-42156956,42157070-42157194,42157273-42157523
          Length = 360

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = +1

Query: 97  TTLSVIIATFFNMSVEASDSGKSDRKLYNSVITADYDDATKRCEQLQSEPDGSY 258
           TT+ V+I    NM +E+ +   SD K  N+V+  DY ++  +   + ++ DGS+
Sbjct: 4   TTVDVMIRKGTNMRLESYEF-LSDFKHGNAVVLLDYTESGNKGSFIVTQVDGSF 56


>01_06_1760 -
           39697079-39697162,39697280-39697340,39697415-39697479,
           39697579-39697860,39697938-39698012,39698121-39698195,
           39698343-39698399,39698653-39698726,39698912-39699055,
           39699608-39699662,39700027-39700149,39700276-39700320,
           39701068-39701160,39701249-39701662
          Length = 548

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
 Frame = +1

Query: 241 EPDGSYIIKNTVTELLNN--AESNTINFSYKLWTTGHQNIVQSCFPLEFRLILDDKKDCK 414
           + +  + +KN +T+   +  A    I  +++L T            +E   I++D    +
Sbjct: 471 DAESEHYVKNVITKFSTDPKARRTVIIIAHRLSTI---QAADRIIVMENGNIVEDGNHSE 527

Query: 415 IINKHDDLYMTLSK 456
           +INKHD LY  L++
Sbjct: 528 LINKHDGLYSRLAR 541


>08_02_1465 -
           27319377-27319405,27319936-27320101,27320336-27320444,
           27320865-27321448
          Length = 295

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +1

Query: 424 KHDDLYMTLSKDLDQNGDRDAYGDEDDHKNS 516
           KH DLY+  S+       RD+Y D+DDH  S
Sbjct: 219 KHPDLYLGKSEK-----GRDSYDDDDDHHES 244


>11_01_0650 -
           5265106-5265305,5265972-5266049,5266391-5266544,
           5266635-5266701,5266723-5266796,5266910-5267794
          Length = 485

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 27/109 (24%), Positives = 46/109 (42%), Gaps = 1/109 (0%)
 Frame = +1

Query: 181 NSVITADYDDATKRCEQLQSEPDGSYIIKNTVTELLNNAESNTINFSYKLWTTGHQNIVQ 360
           ++ I+A  +    RCE + +  D   ++K   T  +   +   +N S  L      +   
Sbjct: 360 SAAISAHLEIVEIRCEMIDNFVDE--VLKYLSTFNILYVDVAILNSSLLLALIAPMSFAM 417

Query: 361 -SCFPLEFRLILDDKKDCKIINKHDDLYMTLSKDLDQNGDRDAYGDEDD 504
            + F  E   I DD +D       DD   +   D D++ D D+Y D+DD
Sbjct: 418 WTIFNFEEIGIFDDDEDEDEDRDGDDDEDSYEDDDDKDEDEDSYEDDDD 466


>06_03_0588 + 22567820-22570802,22570917-22571269
          Length = 1111

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 531 GHKLPTVLMVVLVAICVSITILV*ILAQSHVQIVMLVNN 415
           GH LP +  ++L+    S +I V +L  SH+Q + L NN
Sbjct: 362 GHMLPNIQELILLNNKFSGSIPVSLLNASHLQKLSLANN 400


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,378,202
Number of Sequences: 37544
Number of extensions: 347142
Number of successful extensions: 828
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 803
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1827423340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)