Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e20
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase Tor2|S...    31   0.16 
SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    28   1.5  
SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces ...    27   2.6  
SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces ...    27   3.4  
SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide...    26   4.5  
SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces pom...    25   7.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    25   7.8  

>SPBC216.07c |tor2|SPBC646.01c|phosphatidylinositol kinase
           Tor2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2337

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 2/40 (5%)
 Frame = -2

Query: 565 VAEVLAELMALTACDTALSILLAASNS--KRHNSHCAADD 452
           VAEVL +L+ +  CDT   I L   NS   R N H A  D
Sbjct: 524 VAEVLEKLLTVGICDTVPDIRLTVLNSLDSRFNKHLAQAD 563


>SPAC3G9.01 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 462

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -2

Query: 205 FRLRSHATASPDALAVK-GLFRPQSPFATEGTLRTL 101
           F +  H+T SP ++  K   F P S FAT+  LR L
Sbjct: 248 FVIVDHSTPSPPSIRTKLEAFAPNSTFATQKRLRRL 283


>SPAPB1A11.03 |||FMN dependent dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 407

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 159 TAKASGDAVACDLRRKETYDDNFKHHDKRSRSKNKIPKNVRNDLESALVG 308
           T  A+G    C  +R ETYD N +   K S   N++ K+   DL + + G
Sbjct: 48  TKDAAGYVYGCAGKR-ETYDKNMESFKKWSIIPNRLIKSGFPDLSTTVFG 96


>SPAC17C9.07 |alg8||glucosyltransferase Alg8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = -1

Query: 344 MRFYIFEPNVT*AN*STLQIVSNVFGNFILAPAPFIMMFKI--IIVSFFP 201
           +R Y F PN      + L++ S V   F+LA  P+I M +I  ++   FP
Sbjct: 204 LRVYCFTPNFRPQFLNILKLGSTVISIFLLAFGPWIYMKQIPQLLSRLFP 253


>SPBC409.10 |ade7||phosphoribosylamidoimidazolesuccinocarboxamide
           synthase Ade7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +3

Query: 300 LVGLCDVWFEDIKPHLIRNNIKVHFHGAPPESGDHDGL 413
           L  + + WF+ +KPH+  + I   +   PP    H+ L
Sbjct: 59  LTKISEFWFDVLKPHVQTHLITSRWEELPPVITKHEEL 96


>SPAC1F12.04c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 191

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +3

Query: 405 DGLAAHLTDCSHVDPASSAAQCELCRLLFE 494
           D +AA L + + +DPASS +  +L  +L E
Sbjct: 18  DKIAAILVNVARLDPASSKSTAQLVSMLNE 47


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -3

Query: 495 PRTASGTIHIAPPMTLDRHVSSQSSEPPDHRGLRFP 388
           PR+A  T    PP++  R VS+  + PP   G   P
Sbjct: 366 PRSAPSTGRQPPPLSSSRAVSNPPAPPPAIPGRSAP 401


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,676,022
Number of Sequences: 5004
Number of extensions: 54717
Number of successful extensions: 213
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 213
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)