Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e14
         (567 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc...    26   3.4  
SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.4  
SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces po...    25   5.9  
SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr 2...    25   5.9  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   7.7  

>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 835

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 17/74 (22%), Positives = 37/74 (50%)
 Frame = -3

Query: 298 SLASVTISSKSWLTCSSILRLYLNASINGRLSGKFGFSIPHIFGIFPLIN*YFIKPCI*S 119
           ++A  ++   +W    +++ ++ N      L G FG S+P+++   P+++       I +
Sbjct: 266 TVAEASLKQMAWCGNDAVVLVHENLLT---LVGPFGGSVPYLYNHTPIVSTEVDGVRILT 322

Query: 118 NSSKYIFMKKPPAP 77
             S   F++K PAP
Sbjct: 323 KDSSE-FLRKVPAP 335


>SPBC1271.08c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 140

 Score = 25.8 bits (54), Expect = 4.4
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 318 ADFVTSVYLSEQIQSINEINHYIIKLSSFG 407
           +DF T VY+S  I  +N+I H  + + S G
Sbjct: 16  SDFKTPVYISRSISILNKIFHPCMYIYSRG 45


>SPCC23B6.03c |tel1||ATM checkpoint kinase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2812

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/42 (30%), Positives = 21/42 (50%)
 Frame = -3

Query: 307 SLISLASVTISSKSWLTCSSILRLYLNASINGRLSGKFGFSI 182
           +++SLAS   ++K   TCS I  L L A +    +  F   +
Sbjct: 399 TVLSLASTEQANKKQKTCSQIEELLLQAELANISASSFSLQL 440


>SPBC337.09 |erg28||Erg28 protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 136

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 319 AQW*SLISLASVTISSKSWLTCSSILRLYLNAS-INGRLSGKFG 191
           A+W  ++S+A++  + +S+LT     R+Y N + +NG     FG
Sbjct: 14  AKWNVVVSVAALFNTVQSFLTPKLTKRVYSNTNEVNGLQGRTFG 57


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.0 bits (52), Expect = 7.7
 Identities = 21/70 (30%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = +3

Query: 39  LAVTFLNVKSLYHGAGGFFMKMYFEELDHMQGFIKYQLIRGNIPNIC--GIEKPNLPDNL 212
           LA  F+NVK+LY G   +      EE   +Q    +Q  +G IP I     + P+   + 
Sbjct: 83  LAYLFINVKALYEGTQTYSFVQALEEF-CIQQLRTFQQ-QGYIPVITWPNTDSPSATTSS 140

Query: 213 PLIEAFRYSL 242
           P+     YS+
Sbjct: 141 PISRNPEYSV 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,163,966
Number of Sequences: 5004
Number of extensions: 43120
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 112
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 240047038
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)