Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e12
         (725 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      31   0.13 
SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A |S...    26   6.3  
SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr 1|||...    26   6.3  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   8.3  
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos...    25   8.3  

>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 31.5 bits (68), Expect = 0.13
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = -2

Query: 286 RKKSRRHRNSVFLLRR*YYFFSEFAFFTQIREKLFISYLLYSRHSNILKFLCY 128
           R K   H +  F +   +Y+F  F FF     +  I+  ++   SN++ F C+
Sbjct: 58  RLKLPYHHHHTFTIEAFFYWFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCF 110


>SPCC737.07c |||DNA polymerase alpha-associated DNA helicase A
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 660

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 12/21 (57%), Positives = 14/21 (66%), Gaps = 3/21 (14%)
 Frame = +3

Query: 459 NTCDKLPSSGVPM---GHPLR 512
           N  D+L SSG+PM   GHP R
Sbjct: 268 NIVDRLSSSGIPMVRLGHPAR 288


>SPAC821.06 |spn2||septin Spn2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 331

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 15/75 (20%), Positives = 32/75 (42%)
 Frame = +2

Query: 146 YITMSGVKQVRNKKLLPDLRKEGELTKEIILSTKEKHGVPVTSRLFSHHTLASVRKLSFY 325
           Y+    +    N+KL+    + G     +++         + + LFS H + S  +L + 
Sbjct: 12  YVGFDSITSQINRKLI----RRGFQFNVMVVGPSGSGKSTLINTLFSAHLMDSKGRLDYQ 67

Query: 326 FPYKRQPGLHFNVQI 370
            PY++   +H   Q+
Sbjct: 68  APYRQTTEIHVTSQV 82


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -3

Query: 252 FSFVDNIISLVSSPSLRKSGRSFL 181
           + F DN+ISL+ S  L KS R+ L
Sbjct: 540 YEFSDNVISLLKSRRLDKSDRNEL 563


>SPAC328.04 |||AAA family ATPase, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 741

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 17/73 (23%), Positives = 37/73 (50%), Gaps = 5/73 (6%)
 Frame = +2

Query: 128 IAEKFKYITMSGVKQVRNKKLL---PDLRKE--GELTKEIILSTKEKHGVPVTSRLFSHH 292
           I ++F+  ++S +   + +++L   PD+ +E    + +EI++S  E H   ++   F+ H
Sbjct: 410 IEKQFQSTSISAMTSEKQEQILRECPDIDEELGKSILREIVVSGDEVHWDDISGLEFAKH 469

Query: 293 TLASVRKLSFYFP 331
           +L       F  P
Sbjct: 470 SLKEAVVYPFLRP 482


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,935,720
Number of Sequences: 5004
Number of extensions: 59961
Number of successful extensions: 166
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 341222980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)