Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e12
         (725 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_02_0054 - 10677564-10677671,10679605-10680264                       29   5.0  
11_04_0137 + 13909204-13909315,13910002-13910999,13911058-139112...    28   6.6  
04_04_1395 + 33219711-33220629,33220750-33220787                       28   6.6  
04_04_0035 + 22304934-22305305,22305335-22305904,22306354-22306836     28   6.6  

>01_02_0054 - 10677564-10677671,10679605-10680264
          Length = 255

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = -3

Query: 447 ARSRNRSSLAAGTRRLYPQIAPSSDCIWTLK*SPGC 340
           A S  RS  +A + RLYPQ+AP  D  +  +    C
Sbjct: 103 AHSFGRSHCSAFSFRLYPQVAPDMDAAYAAQLRARC 138


>11_04_0137 +
           13909204-13909315,13910002-13910999,13911058-13911267,
           13911522-13912056,13912154-13912461
          Length = 720

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = +3

Query: 456 RNTCDKLPSSGVPMGHPLRRGGIHERRSPFSVKLMNSGVHSSQTNPGFSRQPA 614
           R+  D + +SG     PL R    +R  P S +      H+S   P F   PA
Sbjct: 491 RSAADVVQTSGRRPSPPLPRRSSVDRSGPSSSRRGYEAAHTSHDRPSFQLTPA 543


>04_04_1395 + 33219711-33220629,33220750-33220787
          Length = 318

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -2

Query: 538 DRRS*IPPRLKG-WPIGTPLLGNLSQVFRSRRQVSQPIVSGCRNTSTLSAN 389
           D  S +P +L G WP G P  G+L+   R  R V+     GC   + L AN
Sbjct: 95  DSSSSLPRQLNGSWPAGLPANGSLAVSTRHNRFVAM----GCNLLANLVAN 141


>04_04_0035 + 22304934-22305305,22305335-22305904,22306354-22306836
          Length = 474

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = -3

Query: 495 LGLHCLVIYHRCFEVVARSRN 433
           L LHC+V+ +RC  ++AR  N
Sbjct: 116 LSLHCVVVDNRCVNIIARLFN 136


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,750,932
Number of Sequences: 37544
Number of extensions: 351438
Number of successful extensions: 849
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 822
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1898162308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)