Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e12
         (725 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical...    31   1.1  
AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical ...    29   2.6  
U23171-1|AAC46702.2|  334|Caenorhabditis elegans Serpentine rece...    29   3.4  
Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical p...    28   5.9  

>AC025716-20|AAT39977.2|  946|Caenorhabditis elegans Hypothetical
           protein Y39G10AR.18a protein.
          Length = 946

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
 Frame = -2

Query: 508 KGWPIGTPLLGNLSQVFRSRRQVSQPIV---SGCRNTSTL----SANCSVE 377
           KGW   TP +  ++ + +S  +V++P     SG  NT TL      NCS E
Sbjct: 91  KGWDQNTPSISEIAALTKSFNRVAKPFASNWSGSYNTDTLKEWGEPNCSAE 141


>AC006610-1|AAK85447.4|  360|Caenorhabditis elegans Hypothetical
           protein C30F12.1 protein.
          Length = 360

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 24/83 (28%), Positives = 38/83 (45%)
 Frame = +3

Query: 363 SKYNHSTEQFADKVDVFLQPETIGCETWRRLRNTCDKLPSSGVPMGHPLRRGGIHERRSP 542
           +K  +STEQ +  ++      TIG ++  R+ +   +L   G+P G P   G    R SP
Sbjct: 125 TKLGYSTEQLSHVLN------TIGVDS--RMDDVLSELVKMGLPGGKPENSGKSGSRNSP 176

Query: 543 FSVKLMNSGVHSSQTNPGFSRQP 611
               +M S   SS  +   S +P
Sbjct: 177 --EPIMTSSASSSSASSSSSHRP 197


>U23171-1|AAC46702.2|  334|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 55 protein.
          Length = 334

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = -3

Query: 225 LVSSPSLRKSGRSFLFRTCFTPDIVIYLNFSAIHQIIYTI 106
           L  SPS+  + + FL  TCF   I+I L F   H+ +  I
Sbjct: 36  LTKSPSILTNLKFFLINTCFLQIILISLGFFTQHRSLPNI 75


>Z81564-11|CAB04576.1|  436|Caenorhabditis elegans Hypothetical
           protein K05C4.11 protein.
          Length = 436

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/54 (27%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
 Frame = -1

Query: 653 RIIIQLVEEYGSTSWLPAEPRVGLR*VNSRIHQLYAEGRPTL-VNTASSQRMAH 495
           RI+++ + + G  S +  E R+G + V + +  L  EG  ++  N+   Q M H
Sbjct: 272 RIVVRFITQEGPPSSMIGEERIGFKVVWTAVEGLIGEGDESVNGNSCKDQFMCH 325


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,989,649
Number of Sequences: 27780
Number of extensions: 332903
Number of successful extensions: 872
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 872
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1708383636
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)