Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e12
         (725 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.55 
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    25   0.55 
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    25   0.73 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   3.9  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    22   6.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 172 LLYSRHSNILKFLCYPS 122
           +LY   S+++ FLCYPS
Sbjct: 300 MLYIPESDLVTFLCYPS 316


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 25.4 bits (53), Expect = 0.55
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 172 LLYSRHSNILKFLCYPS 122
           +LY   S+++ FLCYPS
Sbjct: 300 MLYIPESDLVTFLCYPS 316


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 25.0 bits (52), Expect = 0.73
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = +2

Query: 275 RLFSHHTLASVRKLSFYFPYKRQPGL 352
           R+F HH     R++S YF + R  G+
Sbjct: 316 RIFGHHLNRLGREISTYFTFTRPCGI 341


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 12/47 (25%), Positives = 24/47 (51%)
 Frame = +2

Query: 74  YYALFVFYCLLIVYMI*WIAEKFKYITMSGVKQVRNKKLLPDLRKEG 214
           +Y+L   +  L+   + ++A +  Y    G +Q R  +L+P L  +G
Sbjct: 433 WYSLASSWPALVPLALGFLAGELTYSQEIGDRQERESELVPYLENKG 479


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.8 bits (44), Expect = 6.8
 Identities = 11/43 (25%), Positives = 20/43 (46%)
 Frame = +2

Query: 200 LRKEGELTKEIILSTKEKHGVPVTSRLFSHHTLASVRKLSFYF 328
           LR EG+ T    +   E     + + +  H T +   ++SFY+
Sbjct: 753 LRLEGDETPPYGMELTEAEHYALYTAMAPHATASEFDEMSFYY 795


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 196,102
Number of Sequences: 438
Number of extensions: 4479
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22535775
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)