Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e06
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|...    35   0.009
SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4 |Schizosacc...    34   0.022
SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4 |Schi...    30   0.35 
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    27   1.9  
SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   2.5  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        26   4.4  
SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces pom...    26   5.8  
SPAC26H5.04 |||vacuolar import and degradation protein Vid28|Sch...    26   5.8  
SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|...    26   5.8  

>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
           Sen1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1687

 Score = 35.1 bits (77), Expect = 0.009
 Identities = 35/128 (27%), Positives = 53/128 (41%), Gaps = 13/128 (10%)
 Frame = -3

Query: 385 LCSLHKTGKSF----MACLRIATSSSSHKSNWASIACSDKVGKLLKNFAMN*DAKRFSLS 218
           L +L KT +S     M+CLRI  +SSS    W++     +V   LKN   N  A  F +S
Sbjct: 254 LLNLVKTSESLSSQQMSCLRICCNSSSF---WSAADSFKEVSSFLKNLLKNVTATPFEVS 310

Query: 217 DPFTAASISKYSFSCCE---------ISSFAAAKIS*FLYNFSILSPAIFLCPLTFVKIS 65
           D   A  I+ +  +C           +  F   K +     +S+L     L  L +   S
Sbjct: 311 DMNWAYIIASFFRTCLNDFVSVFPEWLKGFVEEKRTIGFIIYSVLDALFDLLSLDYSSPS 370

Query: 64  LTNNNIEI 41
             NN + +
Sbjct: 371 FLNNTLSL 378


>SPAC29A4.08c |prp19|cwf8|ubiquitin-protein ligase E4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 488

 Score = 33.9 bits (74), Expect = 0.022
 Identities = 34/125 (27%), Positives = 55/125 (44%), Gaps = 9/125 (7%)
 Frame = +3

Query: 144 LAAAKDEISQHEKEYLEILAAVKGSDKEKRLASQFIAKFFNSFPTLSEQAIEAQ-FDLCE 320
           L   K E+S         L  +    KE+  A + +AKF ++  T+S + IE Q  ++ E
Sbjct: 94  LTETKQELSTALYSLDAALRVISRLTKERDEAREALAKFSDNIGTVSSKTIEVQEVEMGE 153

Query: 321 DDD---VAIRKQAIKDLPVLCKEHK----EHTQRIADILAQLLQSEDSTEI-NVVTNSLV 476
            DD    ++R    K    L  + K    +      D ++QLLQ+  ST + N+ T S  
Sbjct: 154 SDDQLKTSLRSTVEKTFQELSSKRKRTKLQPKWATDDAVSQLLQATPSTILENLETESTT 213

Query: 477 TILKS 491
           +   S
Sbjct: 214 SFFPS 218


>SPCP1E11.06 |apl4||AP-1 adaptor complex gamma subunit Apl4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 865

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 28/102 (27%), Positives = 45/102 (44%), Gaps = 8/102 (7%)
 Frame = +3

Query: 396 QRIADILAQLLQSEDSTEINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELANEI--- 566
           +R+  + A LL  E+   + ++TNSL   LKS  K  +    S        ELA ++   
Sbjct: 110 KRLGYLAAMLLLDENQEVLTLLTNSLQNDLKSRDKFIVGLALSAFGNVAGPELARDLSND 169

Query: 567 VRERCI---KFLSSKIQQLGREIINKE--AEELIITECKKIL 677
           + E C     ++S K       +I KE   E L I +  ++L
Sbjct: 170 IAELCSNHHNYISKKAVLCALRVIQKEPDLESLYIEKTDELL 211


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 17/51 (33%), Positives = 31/51 (60%), Gaps = 2/51 (3%)
 Frame = +3

Query: 162 EISQHEKEYLEILAAVKGSDKEKRLASQFIAKFFNSFP--TLSEQAIEAQF 308
           +I + E+E+LEILA ++  +KE    S+  A    + P   LSE+ +++Q+
Sbjct: 179 DIVRSEEEFLEILAKLEQQEKEASNVSE--ASRIATIPPMILSEEEVKSQY 227


>SPBC3E7.05c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 550

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 180 KEYLEILAAVKGSDKEKRLASQFIAKFFNSFPTLSEQAIEAQFD 311
           ++++  L      D+   LAS+ I K  +S P L ++ ++ +FD
Sbjct: 394 RQHVNTLKEATKDDELAALASRVIEKIVDSGPILDKEELQTKFD 437


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 22/88 (25%), Positives = 37/88 (42%), Gaps = 1/88 (1%)
 Frame = +3

Query: 408  DILAQLLQSEDSTEINVVTNSLVTILKSDPKGALSGIFSQIHQNTDGELANEIVRERCIK 587
            D L +L   ED+   + +  S    L+SD  G         ++N+D E  N+ + E    
Sbjct: 3931 DDLEELANEEDTANQSDLDESEARELESDMNGVTKDSVVSENENSDSEEENQDLDEEVND 3990

Query: 588  FLSSKIQQLGREIINKEAEE-LIITECK 668
                    L  ++ ++  EE L+ TE K
Sbjct: 3991 IPEDLSNSLNEKLWDEPNEEDLLETEQK 4018


>SPAC4G8.04 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 772

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 539 VLMNL*EDTRQSSFGITFQNCYKR 468
           +L+++ E TRQ ++ + FQ  YK+
Sbjct: 443 ILLDMKESTRQKNWSLFFQRLYKK 466


>SPAC26H5.04 |||vacuolar import and degradation protein
           Vid28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 729

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 28/115 (24%), Positives = 56/115 (48%), Gaps = 1/115 (0%)
 Frame = +3

Query: 309 DLCEDDDVAIRKQAIKDLPVLCKEHKEHTQRIADILAQLLQSEDSTEINVVTNSLVTILK 488
           +LC D+D+ +++Q ++ L     + +E      D L +++  E   +I      L  +  
Sbjct: 518 ELCNDEDLGVQEQMLQVLRNFTCQKEES----VDFLLKMVPMELLAKI-----LLEKLES 568

Query: 489 SDPKGALSGIFSQIH-QNTDGELANEIVRERCIKFLSSKIQQLGREIINKEAEEL 650
            +P      I+  +H   +DGEL + I+R+       +K+  L +EI+ +EA+ L
Sbjct: 569 KNPILIEPSIYILVHIAASDGELRDSILRQ-------TKLLLLVKEIMLQEAQRL 616


>SPAC17D4.03c |||membrane transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 732

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
 Frame = -2

Query: 407 SNSLSVFFVLFA*NW--QIFYGLFTNSNVVILAQVKLGFYCL 288
           S S+  FF+L       Q+ YGL+TNS  +I   + + F C+
Sbjct: 347 SRSIFYFFLLNVSYMFVQVIYGLWTNSLGLISDAIHMAFDCI 388


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,666,558
Number of Sequences: 5004
Number of extensions: 54329
Number of successful extensions: 184
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 175
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)