Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e05
         (662 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein L21|Sch...   208   5e-55
SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein L21|Sc...   208   7e-55
SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|...    29   0.79 
SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase Vas1|Schizos...    28   1.4  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    26   4.2  
SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr 1|||M...    26   4.2  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    26   4.2  
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces...    25   7.4  
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc...    25   9.7  
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  
SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|c...    25   9.7  

>SPAC959.08 |rpl2102|rpl21-2, rpl21|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 160

 Score =  208 bits (508), Expect = 5e-55
 Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
 Frame = +3

Query: 159 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 338
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 339 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 518
           TG VYNVT  ++GV++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120

Query: 519 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 626
           A GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPATAHFVSTENNEPVTLHPVAYD 157


>SPBC365.03c |rpl2101|rpl21, rpl21-1|60S ribosomal protein
           L21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 160

 Score =  208 bits (507), Expect = 7e-55
 Identities = 101/157 (64%), Positives = 116/157 (73%), Gaps = 1/157 (0%)
 Frame = +3

Query: 159 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 338
           M +S G R  TR  F R FR HG I LSTY+K YKVGDIVDI+ NGAVQKGMPHK YHGK
Sbjct: 1   MPHSYGIRARTRYTFQRGFREHGQIRLSTYLKTYKVGDIVDIKVNGAVQKGMPHKYYHGK 60

Query: 339 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 518
           TG VYNVT  ++GV++ K V  R + KR+N+R+EHVKHSKCRQDFL RVK NE   KEAK
Sbjct: 61  TGVVYNVTQSSVGVLIYKVVGNRYMEKRVNVRIEHVKHSKCRQDFLDRVKANEAKRKEAK 120

Query: 519 AAGKTVNLKRQPAPPKAAHIVS-GTEKPVLLAPIPYE 626
           A GKTV L+RQPAPP  AH VS    +PV L P+ Y+
Sbjct: 121 AQGKTVQLRRQPAPPAKAHFVSTENNEPVTLHPVAYD 157


>SPAC7D4.12c |||DUF1212 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 759

 Score = 28.7 bits (61), Expect = 0.79
 Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 5/69 (7%)
 Frame = -1

Query: 599 GFLSSTDDVGSFRGSWLSLQVDGLAGSL-GFLQ*PL----ILFDSLKEVLSALGVLDMLN 435
           GF S+T    SF+G W+ L +  + G L G LQ  +     +++SL EV  ++ +   L+
Sbjct: 445 GFASATILPMSFQGGWIDLPIAFILGCLVGILQHYIAPRSTMYNSLFEVTGSI-ITSFLS 503

Query: 434 TDIDALRYN 408
               ++RY+
Sbjct: 504 RAFGSIRYS 512


>SPAC4A8.08c |vas1||mitochondrial valine-tRNA ligase
           Vas1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 950

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 271 SPTLYTFMYVESGIVPCVRNLRANKSLVPRR*PLEFVIF 155
           S  L+ F+ +   IVPC+  +  +  ++P R   EF+ F
Sbjct: 743 SDILHIFLKLIHPIVPCISGVMLHSKIIPERKNSEFLSF 781


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +2

Query: 98  KLIHVL*NLSISYTSVYRLEDDELQGLPPRHQGLVRSQVPH 220
           +L  VL ++SI      R  DD +     R  G +R + PH
Sbjct: 603 ELFDVLSSISIQDCETDRANDDTILNNRVRRSGTIREEAPH 643


>SPAC11D3.15 |||oxoprolinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1317

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 20/55 (36%), Positives = 29/55 (52%)
 Frame = -1

Query: 530 LAGSLGFLQ*PLILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESM 366
           +A SLG  Q   +L      +LSA G   M   D+ +    PS+ TL D++TES+
Sbjct: 509 IAKSLGITQ---VLVHKYSSILSAYG---MALADVVSEVQEPSSFTLDDSNTESI 557


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = +2

Query: 230 YSALHVHESVQSWRHCRHQRQWCSSKGYATQSIPW 334
           +  L  H    SW   +  R+ C +KGY     PW
Sbjct: 199 FKFLDSHNVNPSWTWEQTVRELCDAKGYYVMKDPW 233


>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 419

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 425 DALRYNPSANTLVDNHTES 369
           D  R N S N ++DNHT++
Sbjct: 29  DPARKNESTNDVIDNHTDT 47


>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 358

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 14/32 (43%), Positives = 17/32 (53%)
 Frame = +3

Query: 456 KCRQDFLKRVKENERLLKEAKAAGKTVNLKRQ 551
           K   DF KR  E +R+ +E   A KTV L  Q
Sbjct: 181 KKSDDFEKRESEKKRVAQEKVIAAKTVLLALQ 212


>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 433

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 510 EAKAAGKTVNLKRQPAPPKAAHIVSGT 590
           + KA  K  +  +QP+PP A H  + T
Sbjct: 344 DTKAGEKLTDSSKQPSPPVAEHFSNET 370


>SPAC5D6.02c |mug165||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 300

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 418 SASISVLSMSSTPSADKTSLRESKRMRGY*RKPRLPARPST*RDSQLPLKLPTSSVELRN 597
           SAS S  S++S+ S D  ++   +R R   RKP +  +P+  +  + P  + T   +   
Sbjct: 56  SASRSPESIASSQSNDSAAIPSYRRKRRKVRKPEI-VKPTLRKRGRKPKNISTLEHDKSK 114

Query: 598 P 600
           P
Sbjct: 115 P 115


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,193
Number of Sequences: 5004
Number of extensions: 55752
Number of successful extensions: 207
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)