Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26e05
         (662 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal prote...   206   1e-53
Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical pr...    33   0.14 
Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical pr...    33   0.14 
Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical pr...    33   0.14 
AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical...    30   1.3  
U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical pr...    29   2.2  
AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical ...    29   2.9  
Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical pr...    29   3.9  
Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical pr...    28   5.1  
Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical pr...    28   6.8  
U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in bl...    28   6.8  
U64859-8|AAC69096.1|  378|Caenorhabditis elegans Prion-like-(q/n...    28   6.8  
AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical ...    28   6.8  
Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical pr...    27   9.0  
Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical pr...    27   9.0  

>L15188-7|AAA27951.1|  161|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 21 protein.
          Length = 161

 Score =  206 bits (503), Expect = 1e-53
 Identities = 100/161 (62%), Positives = 120/161 (74%), Gaps = 2/161 (1%)
 Frame = +3

Query: 159 MTNSKGYRRGTRDLFARRFRTHGTIPLSTYMKVYKVGDIVDIRGNGAVQKGMPHKVYHGK 338
           MTNSKG RRGTR +FAR FR HG   LSTY   YK GD+VDI+ NGA QKGMP K YHG+
Sbjct: 1   MTNSKGLRRGTRYMFARDFRKHGVEHLSTYYTQYKRGDLVDIKTNGAFQKGMPFKAYHGR 60

Query: 339 TGRVYNVTAHALGVIVNKRVRGRIIPKRINIRVEHVKHSKCRQDFLKRVKENERLLKEAK 518
           TGR++NVT  A+G+IVNKRVRG I+PKRINIR+EH+K SKCR DFL RVK N+   K AK
Sbjct: 61  TGRIFNVTRGAVGIIVNKRVRGNILPKRINIRIEHIKPSKCRTDFLNRVKSNDEKRKAAK 120

Query: 519 AAGKTV-NLKRQPAPPKAAH-IVSGTEKPVLLAPIPYEFVA 635
           +AG+ V  LKR P  P+ AH + +   +P LLAP+ +E VA
Sbjct: 121 SAGQPVPALKRLPVAPRGAHTVTTQNNEPELLAPLRFEIVA 161


>Z83244-6|CAD18877.1|  502|Caenorhabditis elegans Hypothetical
           protein W06F12.2c protein.
          Length = 502

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 343 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 206
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-5|CAB54315.1|  568|Caenorhabditis elegans Hypothetical
           protein W06F12.2b protein.
          Length = 568

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 343 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 206
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 226 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 271


>Z83244-4|CAB54314.1|  562|Caenorhabditis elegans Hypothetical
           protein W06F12.2a protein.
          Length = 562

 Score = 33.5 bits (73), Expect = 0.14
 Identities = 18/46 (39%), Positives = 24/46 (52%)
 Frame = -2

Query: 343 PVFPWYTLCGIPF*TAPLPLMSTMSPTLYTFMYVESGIVPCVRNLR 206
           PVFP Y+  G+P    PLP     +P     M V+  + P V+NLR
Sbjct: 220 PVFPSYSRAGVPQTPIPLPPTQINTPYPIDPMEVQFTVQPKVKNLR 265


>AC084197-45|AAK68589.4|  751|Caenorhabditis elegans Hypothetical
           protein Y73B6BL.1 protein.
          Length = 751

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = +2

Query: 260 QSWRHCRHQRQWCSSKGYATQSIPWKDRSRVQRDCSCSRCDCQQAC 397
           Q  RHC  Q   C S  Y      W+ RSRV    +C+  +  Q C
Sbjct: 366 QPVRHCSEQDATCDSPFYWCDMKLWRCRSRVVYGGNCTGYEGTQIC 411


>U00047-4|AAA50690.1|  825|Caenorhabditis elegans Hypothetical
           protein ZK418.6 protein.
          Length = 825

 Score = 29.5 bits (63), Expect = 2.2
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +3

Query: 537 NLKRQPAPPKAAHIVSGTE 593
           NL+R+PAPPK  H+ S  E
Sbjct: 462 NLRRRPAPPKQNHVASPAE 480


>AL132853-5|CAB60443.1|  279|Caenorhabditis elegans Hypothetical
           protein Y80D3A.9 protein.
          Length = 279

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -1

Query: 602 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 516
           DG LS  D+    RG+WL +   G  G L
Sbjct: 39  DGMLSGVDEKDVARGTWLGMDAHGKVGML 67


>Z46267-9|CAA86427.2|  889|Caenorhabditis elegans Hypothetical
           protein F49E2.5d protein.
          Length = 889

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
 Frame = +3

Query: 435 VEHVKHSKCRQDFLKRVKENERLLKEAKAAGKTVN-LKRQPAPPKAAHIVSGTEKPVLLA 611
           VE+V          +  K+N++  K++++   T   ++  PAPP+   +V   EKPV  A
Sbjct: 361 VENVVEKSTTPPATENKKKNKKDKKKSESEKVTEQPVESAPAPPQVEQVVEKVEKPV--A 418

Query: 612 PI 617
           P+
Sbjct: 419 PV 420


>Z92775-2|CAB07162.2|  382|Caenorhabditis elegans Hypothetical
           protein C06H5.2 protein.
          Length = 382

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 497 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 342
           LILFD+LK VL ++GVL   +  I+ L     A  L   +TE +    + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251


>Z92775-1|CAB07161.2|  379|Caenorhabditis elegans Hypothetical
           protein C06H5.1 protein.
          Length = 379

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 18/52 (34%), Positives = 28/52 (53%)
 Frame = -1

Query: 497 LILFDSLKEVLSALGVLDMLNTDIDALRYNPSANTLVDNHTESMSSHVVHAT 342
           LILFD+LK VL ++GVL   +  I+ L     A  L   +TE +    + ++
Sbjct: 200 LILFDALKNVLQSVGVLTTKSVLINWLPSVQIAEILEHFNTEILEDLTIKSS 251


>Z78016-1|CAB01439.1|  276|Caenorhabditis elegans Hypothetical
           protein R186.1 protein.
          Length = 276

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -1

Query: 602 DGFLSSTDDVGSFRGSWLSLQVDGLAGSL 516
           DG LS  D   + RG+WL L  +G  G +
Sbjct: 39  DGILSGVDKQENARGTWLGLNENGRIGMM 67


>Z81491-1|CAB04019.1|  181|Caenorhabditis elegans Hypothetical
           protein D1086.1 protein.
          Length = 181

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 11/37 (29%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = +2

Query: 317 TQSIPW--KDRSRVQRDCSCSRCDCQQACSRKDYTEA 421
           T+ + W   D+SR+  D  C++   ++ C  KD+ +A
Sbjct: 120 TECVQWYFSDKSRMSTDQKCAQFKAKKQCIEKDFGKA 156


>U64859-9|AAC69090.1|  378|Caenorhabditis elegans Activated in
           blocked unfolded proteinresponse protein 9 protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/68 (29%), Positives = 25/68 (36%)
 Frame = +2

Query: 353 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 532
           Q  CSC +    Q+CS +      Q P  +C   Q Q     + Q    A    Q CRQ 
Sbjct: 34  QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91

Query: 533 RQPEETAS 556
            Q     S
Sbjct: 92  CQSAPAVS 99


>U64859-8|AAC69096.1|  378|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 57
           protein.
          Length = 378

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 20/68 (29%), Positives = 25/68 (36%)
 Frame = +2

Query: 353 QRDCSCSRCDCQQACSRKDYTEAHQYPC*ACQALQVQTRLP*ESQRE*EATEGSQGCRQD 532
           Q  CSC +    Q+CS +      Q P  +C   Q Q     + Q    A    Q CRQ 
Sbjct: 34  QSQCSCQQVQQTQSCSCQSAPVQQQAP--SCSCAQPQQTQTVQVQSTQCAPACQQSCRQQ 91

Query: 533 RQPEETAS 556
            Q     S
Sbjct: 92  CQSAPAVS 99


>AF040640-1|AAD34652.1|  602|Caenorhabditis elegans Hypothetical
           protein F09D1.1 protein.
          Length = 602

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 131 SYTSVYRLEDDELQGLPPRHQGLVRSQVPHTWNYSALHVHES 256
           +YTS+ R   D+L  LP R   L+R      WN  AL  H S
Sbjct: 289 NYTSIKRPPGDKLTLLPQRFGELIRK----LWNPRALRTHVS 326


>Z71177-9|CAA94868.2|  425|Caenorhabditis elegans Hypothetical
           protein AC3.4 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 353 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 448
           ++ C C+ R     +C R  YT+  QY C +CQ
Sbjct: 26  RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57


>Z71177-2|CAA94867.1|  425|Caenorhabditis elegans Hypothetical
           protein AC3.3 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = +2

Query: 353 QRDCSCS-RCDCQQACSRKDYTEAHQYPC*ACQ 448
           ++ C C+ R     +C R  YT+  QY C +CQ
Sbjct: 26  RQSCGCAPRVQPSCSCQRTTYTQPQQYSC-SCQ 57


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,163,240
Number of Sequences: 27780
Number of extensions: 322295
Number of successful extensions: 1171
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 1105
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1170
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1486926498
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)