Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d24
         (719 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    30   0.38 
SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase Ppk38|Schizo...    27   2.7  
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ...    27   3.6  
SPAC630.05 |gyp7||GTPase activating protein Gyp7 |Schizosaccharo...    26   6.2  
SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit Apc1|Sc...    26   6.2  
SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   6.2  
SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   8.2  
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc...    25   8.2  

>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 29.9 bits (64), Expect = 0.38
 Identities = 36/143 (25%), Positives = 61/143 (42%), Gaps = 2/143 (1%)
 Frame = +2

Query: 134  TDTQTNLQFQKH--IEIPNDIEIFILLEGKYLAHSIKQNVCNLELINSVPEISLKIYKMH 307
            +D Q  L+ QK    E P+ ++   ++E   L   I+  V      N   EI++   K  
Sbjct: 710  SDIQQQLRLQKRSITEYPSQLDPLFMVE---LPTPIRNEV------NDNHEIAMN--KRL 758

Query: 308  SLESYVXXXXXXXXXXXXXXXHLLEKYITNSKKVISMITKPLVEYATSEVCHEECVIRRL 487
            SL+S+                +  +K +  SKK    I KP V+Y T +   ++   + L
Sbjct: 759  SLKSHADNKIDERGKKKIRQENAFDKLLQISKKS-KTINKPNVDYLTLKELPKDLQKQIL 817

Query: 488  STKNCKNSSLSKYPCLEQPNIIS 556
               N + S L     LE+P+I++
Sbjct: 818  KESNLQKSDLISEVKLEKPHIVT 840


>SPCP1E11.02 |ppk38||Ark1/Prk1 family protein kinase
           Ppk38|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 22/60 (36%), Positives = 34/60 (56%), Gaps = 1/60 (1%)
 Frame = -1

Query: 377 VNELFHYYKLCHNRK*CIHNFRGSAFYK-SLG*FQVLSL*VPDCIHSVLLNGLNTFLPVK 201
           V+E     KL  N+K C+ ++ GS F++ S   F+VL L +  C    L++ LNT L V+
Sbjct: 78  VHEEVRTMKLVSNQKRCV-SYYGSEFFRTSKNQFEVLVL-LEYCPCGGLIDFLNTRLQVR 135


>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
           Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 879

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 14/55 (25%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
 Frame = -1

Query: 665 CVFRFVHVLRGIQYKTLVPKLTSPGVLLSIPLLQKFQILYLV-VPSMDIYLMMNS 504
           C    VHVL+ I+Y+    +L +  ++ ++ +L     L L   P+  +Y++  S
Sbjct: 93  CFQNLVHVLQDIRYQLSFARLRNSDLVTALDILSTGTSLRLANAPTSKLYMLSES 147


>SPAC630.05 |gyp7||GTPase activating protein Gyp7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 743

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = +3

Query: 72  EKLLNHQAELLGKIGMKITVLQIRKPIYNFKNTL 173
           +++L +  EL GK+ ++ T++   +  Y FKN L
Sbjct: 662 DEVLKYFNELSGKLALEPTLICAEQCFYQFKNKL 695


>SPBC106.09 |cut4|apc1|anaphase-promoting complex subunit
            Apc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1458

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +2

Query: 584  REHLDLSALALVFYTEYPEEHEQNEIH 664
            R +L ++AL + FY ++P   + N  H
Sbjct: 1210 RSNLAIAALLISFYPQFPRTTQDNRAH 1236


>SPBC1604.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 6.2
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = +2

Query: 158 FQKHIEIPNDIEIFILLEGKYLAHSIKQNVCNL 256
           ++ HI  P  IE F+L  G  L H  + N+  L
Sbjct: 88  YKTHIGHPKFIEPFVLFYGDRLVHDARYNLHEL 120


>SPAC23D3.01 |||PWWP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 407

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +2

Query: 614 LVFYTEYPEEHEQNEIHKIL 673
           L+ Y  YP+E + + +H+IL
Sbjct: 301 LLSYNHYPQESDMSHVHQIL 320


>SPBC4C3.12 |sep1||fork head transcription factor
           Sep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 663

 Score = 25.4 bits (53), Expect = 8.2
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +2

Query: 29  KRRGLVIVGKMNNFGEIIEPSSRTT 103
           K +G+V  GK NN     +PSS+ T
Sbjct: 47  KLKGVVAGGKENNIASFQKPSSKAT 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,165,313
Number of Sequences: 5004
Number of extensions: 67727
Number of successful extensions: 186
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 337208592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)