Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d24
         (719 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301     30   2.1  
09_01_0073 - 1057560-1058043,1058199-1058385,1058754-1059062,105...    30   2.1  
10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565           29   4.9  
12_02_1047 + 25666113-25666442,25666606-25666651,25667042-256671...    28   6.5  

>10_08_1006 - 22194013-22196054,22197357-22198337,22198974-22199301
          Length = 1116

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
 Frame = +2

Query: 89  SSRTTWEDWDENNSSTDTQTNLQFQKHIEIPNDIEIFILLEGKYLAHSIKQNVCNLELIN 268
           S++  WE W E N +   +            N +   I+ E   L ++  QN    E + 
Sbjct: 370 SAKVLWEQWVEKNPNNYEELKRAGSNPHNFENIVSNIIIAEDPELGYTTLQN----ERLK 425

Query: 269 SVPEISLKIYK--MHSLE---SYVXXXXXXXXXXXXXXXHLLEKYITNSKKVISMIT 424
            + +++L  +K  +H+++   + V               H +E YI  +K +I  IT
Sbjct: 426 EIEKLTLTSWKEIVHTIDDNKAEVSTDMSGIKKIHNQLAHNVEVYINGTKYIIDEIT 482


>09_01_0073 -
           1057560-1058043,1058199-1058385,1058754-1059062,
           1059427-1060269,1061572-1062552,1063189-1063516
          Length = 1043

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 25/117 (21%), Positives = 47/117 (40%), Gaps = 5/117 (4%)
 Frame = +2

Query: 89  SSRTTWEDWDENNSSTDTQTNLQFQKHIEIPNDIEIFILLEGKYLAHSIKQNVCNLELIN 268
           S++  WE W E N +   +            N +   I+ E   L ++  QN    E + 
Sbjct: 370 SAKVLWEQWVEKNPNNYEELKRAGSNPHNFANIVSNIIIAEDPELGYTTLQN----ERLK 425

Query: 269 SVPEISLKIYK--MHSLE---SYVXXXXXXXXXXXXXXXHLLEKYITNSKKVISMIT 424
            + +++L  +K  +H+++   + V               H +E YI  +K +I  IT
Sbjct: 426 EIEKLTLTSWKEIVHTIDDNKAEVSTDMSGIKKIHNQLAHNVEVYINGTKYIIDEIT 482


>10_06_0007 + 9510385-9510535,9510860-9511433,9511553-9511565
          Length = 245

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 20/83 (24%), Positives = 34/83 (40%)
 Frame = +2

Query: 53  GKMNNFGEIIEPSSRTTWEDWDENNSSTDTQTNLQFQKHIEIPNDIEIFILLEGKYLAHS 232
           GK   +GE    S++  WE W E N +   +            N I   I+ E   L ++
Sbjct: 43  GKRKRYGE--GESAKVLWEQWVEKNPNNYEELKRAGSNPHNFANVISNIIIAEDPELGYT 100

Query: 233 IKQNVCNLELINSVPEISLKIYK 301
             QN    E +  + +++L  +K
Sbjct: 101 TLQN----ERLKEIEKLTLTSWK 119


>12_02_1047 +
           25666113-25666442,25666606-25666651,25667042-25667130,
           25667291-25667493,25667807-25667949,25668286-25668332,
           25668794-25668870,25668952-25668981,25669068-25669163,
           25669489-25669591,25669959-25670041,25670204-25670326,
           25670465-25670576,25670791-25670898,25671006-25671593
          Length = 725

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 12/44 (27%), Positives = 23/44 (52%)
 Frame = +2

Query: 503 KNSSLSKYPCLEQPNIISGISAGVVCLREHLDLSALALVFYTEY 634
           +N ++  YP  + P  +   S+ + CL   + LS+  + FY +Y
Sbjct: 312 RNETMIYYPSRDDPEAVELSSSDIKCLDPGVYLSSPVINFYIQY 355


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,994,527
Number of Sequences: 37544
Number of extensions: 350262
Number of successful extensions: 767
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 735
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1874582652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)