Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d24
         (719 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm rece...    29   4.4  
AL117203-2|CAB55104.1|  321|Caenorhabditis elegans Hypothetical ...    28   5.8  
AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation...    28   7.7  

>Z81454-2|CAB03804.2|  346|Caenorhabditis elegans Hypothetical
           protein B0391.4 protein.
          Length = 346

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 22/71 (30%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = -1

Query: 719 QYAIWFWIKFEMEIFPVSCVFRFVHVLRGIQ---YKTLVPKLTSPGVLLSIPLLQKFQIL 549
           QYAI F+  + M       +  F   LR      +KTLV ++T+P ++L IP+     I+
Sbjct: 217 QYAIMFYCGWSMHTKMEDKIKNFSETLRKHHKQFFKTLVLQITTPTIILFIPIT---III 273

Query: 548 YLVVPSMDIYL 516
           +L +  +D+ L
Sbjct: 274 FLPLFHLDVSL 284


>AF068709-9|AAC19248.1|  349|Caenorhabditis elegans Seven tm
           receptor protein 13 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/71 (26%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
 Frame = -1

Query: 719 QYAIWFWIKFEMEIFPVSCVFRFVHVLRGIQ---YKTLVPKLTSPGVLLSIPLLQKFQIL 549
           QY +  +  + M       +  F   LR +    +KTLV ++T+P ++L IP+     I+
Sbjct: 217 QYGVMIYCGWSMHTKMEDKIKNFSETLRKLHKQFFKTLVLQITAPTIILFIPIT---III 273

Query: 548 YLVVPSMDIYL 516
           +L + ++D+ L
Sbjct: 274 FLPLFNLDVSL 284


>AL117203-2|CAB55104.1|  321|Caenorhabditis elegans Hypothetical
           protein Y48C3A.3 protein.
          Length = 321

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 14/52 (26%), Positives = 25/52 (48%)
 Frame = +2

Query: 17  PFP*KRRGLVIVGKMNNFGEIIEPSSRTTWEDWDENNSSTDTQTNLQFQKHI 172
           P+  + R L I G+  N  E +E      + DWD+  +   T T+   ++H+
Sbjct: 263 PYTSEHRDL-IDGECKNLAEYVERIKNRFYPDWDDVTTKFSTDTSNWKKRHV 313


>AF016452-10|AAB66019.1|  620|Caenorhabditis elegans Gastrulation
           defective protein 1 protein.
          Length = 620

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = +2

Query: 371 HLLEKYITNSKKVISMITKPLVEYATSEVCHEECVIRRLS 490
           H+      + + V+S +TKPL     SEV  E+ V+  LS
Sbjct: 443 HVYYDQTMSQRGVMSCVTKPLKRNRASEVVREDMVLSPLS 482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,827,719
Number of Sequences: 27780
Number of extensions: 358008
Number of successful extensions: 880
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 859
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 880
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)