Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d22
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.07c |||mitochondrial inner membrane peptidase complex c...   101   9e-23
SPBC336.13c |||mitochondrial inner membrane peptidase complex ca...    72   6e-14
SPBP4H10.06c |cut14|smc2, smc2|condensin subunit Cut14|Schizosac...    27   3.0  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   4.0  
SPAC1B3.07c |vps28||ESCRT I complex subunit Vps28|Schizosaccharo...    26   4.0  

>SPBC2D10.07c |||mitochondrial inner membrane peptidase complex
           catalytic subunit|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 157

 Score =  101 bits (242), Expect = 9e-23
 Identities = 52/122 (42%), Positives = 72/122 (59%), Gaps = 4/122 (3%)
 Frame = +3

Query: 288 LQYACITHCTFEYIGDFVMCSGPSMEPTLESNN-ILLTEHISPRLQK-LRRGDIIIAKSP 461
           +Q A   H   EY+    M SGPSM PTL S    +L + +  R  +    GD++++  P
Sbjct: 12  VQIAAFVHQIHEYLFQVQMTSGPSMMPTLNSGGEFVLLDKLHGRFARSCSVGDVVVSAKP 71

Query: 462 SNPRQNICKRIKGLPGDK--VRGNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGL 635
           S+ +Q++CKRI G+PGD   V      +   +P GHVWL GDN ++S DSR YGPVP GL
Sbjct: 72  SDSKQHVCKRIIGMPGDTIYVDPTSSNKKITIPLGHVWLAGDNIAHSLDSRNYGPVPMGL 131

Query: 636 IR 641
           I+
Sbjct: 132 IK 133


>SPBC336.13c |||mitochondrial inner membrane peptidase complex
           catalytic subunit 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 180

 Score = 72.1 bits (169), Expect = 6e-14
 Identities = 39/101 (38%), Positives = 59/101 (58%), Gaps = 5/101 (4%)
 Frame = +3

Query: 351 GPSMEPTL--ESNNILLTEHISPRLQK-LRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR 521
           G SM+P    E+N +     +  +  K  +RGD++I +SP NP + + KR+ G+  D ++
Sbjct: 44  GRSMKPAFNPETNMLQRDRVLLWKWNKDYKRGDVVILRSPENPEELLVKRVLGVEYDIMK 103

Query: 522 GNFPKRSQVVP--RGHVWLEGDNSSNSADSRIYGPVPAGLI 638
              PK+  +VP   GHVW+EGD   +S DS  +GPV  GLI
Sbjct: 104 TRPPKKLSLVPVPEGHVWVEGDEQFHSIDSNKFGPVSTGLI 144


>SPBP4H10.06c |cut14|smc2, smc2|condensin subunit
           Cut14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1172

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 363 EPTLESNNILLTEHISPRLQKLR 431
           E  +E  N LL E I PRL KLR
Sbjct: 189 EAKVEEINTLLREEIEPRLTKLR 211


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
           subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 375 ESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGN 527
           E   + +  +I+  +  LR  D+     PS P +  C+R+KG  G + RGN
Sbjct: 305 EFMQLSIAMYINSEMPGLRPSDM-----PSKPIRGFCQRLKGKQG-RFRGN 349


>SPAC1B3.07c |vps28||ESCRT I complex subunit
           Vps28|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 6/65 (9%)
 Frame = +3

Query: 378 SNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPG------DKVRGNFPKR 539
           SN I  T   S  +       +   K+PSNP  +I K I GL        D +R NF  +
Sbjct: 119 SNAISTTAEPSIAMNDTTPQTVNPTKAPSNPSASIAKSIAGLVQNFITTLDAIRLNFIAK 178

Query: 540 SQVVP 554
            Q+ P
Sbjct: 179 DQLHP 183


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,710,755
Number of Sequences: 5004
Number of extensions: 57773
Number of successful extensions: 146
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 143
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)