Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26d22
(641 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537 87 1e-17
04_01_0338 + 4424928-4425072,4425158-4425233,4425350-4425515,442... 73 2e-13
03_01_0337 + 2664648-2664670,2664752-2664838,2664930-2665095,266... 61 8e-10
04_01_0008 - 173220-173301,173398-173504,173813-173996,176113-17... 40 0.001
02_02_0375 + 9543411-9543872,9547222-9547290,9547382-9547384,954... 40 0.001
09_04_0361 - 16948740-16948860,16948951-16949018,16949424-169495... 38 0.005
09_06_0268 + 21942591-21942690,21942821-21942904,21943116-219431... 30 1.8
06_03_0763 - 24405525-24405701,24406209-24406368,24406924-244070... 29 4.1
07_03_0383 - 17476271-17479228,17480466-17480750 28 5.5
>11_06_0417 - 23312875-23312925,23314136-23314246,23315073-23315537
Length = 208
Score = 86.6 bits (205), Expect = 1e-17
Identities = 44/103 (42%), Positives = 65/103 (63%), Gaps = 7/103 (6%)
Frame = +3
Query: 351 GPSMEPTLE-SNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR-- 521
GPSM P + + +++ + +S RL ++ GD ++ SP NPR+ + KR+ G+ GD V
Sbjct: 83 GPSMLPAMNLAGDVVAVDLVSARLGRVASGDAVLLVSPENPRKAVVKRVVGMEGDAVTFL 142
Query: 522 ---GNFP-KRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLI 638
GN ++ VVP+GHVW++GDN S DSR +GPVP GLI
Sbjct: 143 VDPGNSDASKTVVVPKGHVWVQGDNIYASRDSRQFGPVPYGLI 185
>04_01_0338 +
4424928-4425072,4425158-4425233,4425350-4425515,
4425669-4425791
Length = 169
Score = 72.9 bits (171), Expect = 2e-13
Identities = 38/99 (38%), Positives = 56/99 (56%), Gaps = 3/99 (3%)
Frame = +3
Query: 351 GPSMEPTLES---NNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVR 521
G SM PTLES + L++ L RGD+++ +SP+ R + KR+ LPGD ++
Sbjct: 37 GTSMNPTLESQQGDRALVSRLCLDARYGLSRGDVVVFRSPTEHRSLLVKRLIALPGDWIQ 96
Query: 522 GNFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPAGLI 638
+ + +P GH W+EGDN S DSR YGP+ L+
Sbjct: 97 VPAAQEIRQIPVGHCWVEGDNPDVSWDSRSYGPLWCALV 135
>03_01_0337 +
2664648-2664670,2664752-2664838,2664930-2665095,
2665817-2665891,2666931-2667038
Length = 152
Score = 60.9 bits (141), Expect = 8e-10
Identities = 30/88 (34%), Positives = 49/88 (55%)
Frame = +3
Query: 372 LESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQVV 551
LE ++L E + + GD+++ K PS+ R+ KR+ LPG+ ++ +
Sbjct: 10 LELGAVVLAERSCLQKYQFSHGDVVLFKCPSDHRELFVKRLIALPGEWMQLPGTPDIIKI 69
Query: 552 PRGHVWLEGDNSSNSADSRIYGPVPAGL 635
P GH W+EGDN++ S DSR +GP G+
Sbjct: 70 PEGHCWVEGDNAACSWDSRSFGPEVDGI 97
>04_01_0008 -
173220-173301,173398-173504,173813-173996,176113-176288,
176612-176683
Length = 206
Score = 40.3 bits (90), Expect = 0.001
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Frame = +3
Query: 435 GDIIIAKSPSNPRQNICKRIKGLPGDKVRGNFPKRSQ-VVPRGHVWLEGDNSS----NSA 599
GD+++ K P I +R+ L G ++ N K V+ + W+ DN S +
Sbjct: 88 GDVVLLKDPEKSDDLIVRRLAALEGYEMVSNDEKDEPFVLDKDQCWVLADNQSLKPKEAR 147
Query: 600 DSRIYGPVP 626
DSR++GPVP
Sbjct: 148 DSRLFGPVP 156
>02_02_0375 +
9543411-9543872,9547222-9547290,9547382-9547384,
9548336-9548422,9549027-9549094,9549192-9549333
Length = 276
Score = 40.3 bits (90), Expect = 0.001
Identities = 29/99 (29%), Positives = 49/99 (49%), Gaps = 8/99 (8%)
Frame = +3
Query: 357 SMEPTLESNNILLTEHISPRLQKLRRGDIIIAKSPSNPRQNICKRIKGLPGDKVRG---- 524
SM PT + + ++ E ++ +K DI+I KSP P + K + +VR
Sbjct: 139 SMFPTFDVGDRIVAEKVTYYFRKPCINDIVIFKSP--PVLQEVHKGKLVVNGEVRNEEFI 196
Query: 525 ----NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVPA 629
++ VP V++ GDN +NS DS ++GP+P+
Sbjct: 197 LEPPSYDMNPVQVPENSVFVMGDNRNNSYDSHVWGPLPS 235
>09_04_0361 -
16948740-16948860,16948951-16949018,16949424-16949510,
16949626-16949694,16949786-16949854,16949944-16950765
Length = 411
Score = 38.3 bits (85), Expect = 0.005
Identities = 15/34 (44%), Positives = 23/34 (67%)
Frame = +3
Query: 525 NFPKRSQVVPRGHVWLEGDNSSNSADSRIYGPVP 626
N+ +VP G+V++ GDN +NS DS +GP+P
Sbjct: 343 NYEMEPMLVPEGYVFVLGDNRNNSFDSHNWGPLP 376
>09_06_0268 +
21942591-21942690,21942821-21942904,21943116-21943192,
21943266-21943336,21943646-21943717,21943894-21943965,
21944057-21944122,21944411-21944476,21944553-21944770,
21944983-21945254,21945513-21945778,21945879-21945999,
21946094-21946230,21946362-21946518,21947055-21947189
Length = 637
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/41 (34%), Positives = 24/41 (58%)
Frame = +3
Query: 297 ACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEHISPRL 419
AC H EY+ + +CS P + ++S+N+LL ++P L
Sbjct: 448 ACTAHA-LEYLHE--VCSPPVLHKNIKSSNVLLDADLNPHL 485
>06_03_0763 -
24405525-24405701,24406209-24406368,24406924-24407005,
24407098-24407167,24407443-24407607,24407731-24407874,
24408467-24408715,24409006-24409221,24409306-24409398
Length = 451
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +3
Query: 294 YACITHCTFEYIGDFVMCSGPSMEPTLESNNILLTEH-ISPRLQKLRRGDII 446
YAC TH F SG E + +N+ILL EH P+L L +++
Sbjct: 331 YACSTHAVFSPPA-IERLSGGIFEEVIVTNSILLPEHKCFPQLTVLSMANLV 381
>07_03_0383 - 17476271-17479228,17480466-17480750
Length = 1080
Score = 28.3 bits (60), Expect = 5.5
Identities = 13/38 (34%), Positives = 20/38 (52%)
Frame = -2
Query: 529 KLPLTLSPGSPFILLHIFCLGFDGLLAMIISPRLSFWS 416
+LP L P PF+L + +G + LL S ++WS
Sbjct: 937 ELPQWLQPQQPFVLKRLDIIGTEELLDKCSSASSTYWS 974
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,760,276
Number of Sequences: 37544
Number of extensions: 312752
Number of successful extensions: 688
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 669
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 684
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1584867848
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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