Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d19
         (446 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0368 + 7840665-7841975                                           31   0.32 
01_01_0447 - 3327727-3328144,3328438-3328688,3328820-3328909,332...    28   3.0  
12_01_0585 - 4774877-4775008,4775150-4775308,4776030-4776131,477...    27   6.9  
07_03_0601 - 19872780-19873099,19873148-19873151,19874196-198743...    27   9.1  
02_01_0313 + 2097302-2097657,2099389-2100502                           27   9.1  

>03_02_0368 + 7840665-7841975
          Length = 436

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +3

Query: 78  ESFLARSFHLNFSVKS*WQCTTEDMSEAPKAAVTACIHSNLATQQWEDVALFPLVHHIDS 257
           ESFL R+FH +F + +     T D +   +A + A  + ++A   WE+V L    H+ + 
Sbjct: 217 ESFLNRAFHADFELDTEGDVHTADPAGRCEANLAA--YHSIAALTWEEVLLHGTKHYSEG 274

Query: 258 CNQ 266
            ++
Sbjct: 275 LSR 277


>01_01_0447 -
           3327727-3328144,3328438-3328688,3328820-3328909,
           3329061-3329159,3329240-3329353,3329450-3329555,
           3329661-3329740,3329913-3330173,3330271-3330507,
           3330635-3330922
          Length = 647

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 11  INLSFQQQINRLVSAFVKYRKTRIFSCS 94
           ++L FQ+QI  ++S   K R+T +FS +
Sbjct: 186 LDLGFQKQITSIISKLPKLRRTGLFSAT 213


>12_01_0585 -
           4774877-4775008,4775150-4775308,4776030-4776131,
           4776480-4776485,4776655-4777008
          Length = 250

 Score = 27.1 bits (57), Expect = 6.9
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 246 GGQEEKAPHPPIVGLQGWN 190
           GG  E   HP IVG QGW+
Sbjct: 165 GGDPECDLHPAIVGKQGWS 183


>07_03_0601 -
           19872780-19873099,19873148-19873151,19874196-19874357,
           19874429-19874617,19874687-19875010,19875103-19875378,
           19875436-19875478,19876110-19876188,19876473-19876555,
           19876708-19876782,19877324-19877490,19877960-19878370
          Length = 710

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 11  INLSFQQQINRLVSAFVKYRKTRIFSCS 94
           ++ +FQ+Q++ +VS   K R+T +FS +
Sbjct: 389 LDKNFQEQVDNVVSQLPKVRQTLLFSAT 416


>02_01_0313 + 2097302-2097657,2099389-2100502
          Length = 489

 Score = 26.6 bits (56), Expect = 9.1
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 253 SIWWTRGKSATSSHCWV 203
           S WW  G++A +  CWV
Sbjct: 3   SSWWWHGRAAAAVACWV 19


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,294,572
Number of Sequences: 37544
Number of extensions: 158413
Number of successful extensions: 439
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 434
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 439
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 859680288
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)