Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d17
         (760 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|ch...    27   2.2  
SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transpo...    27   2.2  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    27   2.9  
SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyce...    26   5.1  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.9  
SPBC13A2.01c |||nuclear cap-binding complex small subunit|Schizo...    25   8.9  
SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   8.9  

>SPBC2F12.03c |||EST1 family protein|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 891

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = +3

Query: 420  TNE-PR-IDASLT*TTPTFLRSSCPRELPMVILSECPVHKNSKVKI*ITKNGRS*WRPRR 593
            +NE PR +D+  + T+  F  S+    L    LS C  H N   +    +  R  +RP R
Sbjct: 799  SNESPRAVDSGFSRTSTPFSESTSSYPLVSGNLSSCETHLNGSPQNGHLQGERVLFRPLR 858

Query: 594  TPGSNSRSKNGRAP 635
            +P  N+ S     P
Sbjct: 859  SPALNTFSTPATEP 872


>SPCC18B5.01c |bfr1|hba2, SPCPJ732.04c|brefeldin A efflux transporter
            Bfr1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1530

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +2

Query: 371  EERRRIGLEIDKYRQNYQRTEDRREFDLND 460
            EER+ I  E+DK   ++  +ED++     D
Sbjct: 1162 EERKAISAELDKINASFSNSEDKKTLSKED 1191


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = -3

Query: 116 SAFFSSSKSVPISLTS--VRISAPFPSLGSAPFPS 18
           S  F+++ + P+  T+  V I  P P+  S+PFPS
Sbjct: 771 SVGFTTTIATPVGTTAGTVLIDVPTPTASSSPFPS 805


>SPCP1E11.11 |||Puf family RNA-binding protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 642

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 18/62 (29%), Positives = 30/62 (48%)
 Frame = +3

Query: 264 KRRDQNERSSKDGSWPSRNR*SKTVTWPRS*KPDREKNVVVSAWK*TSTVRITNEPRIDA 443
           KR++  E   KDGS   R + +K      S  P ++KN   S    + ++   N+ + D+
Sbjct: 5   KRKESTEVKKKDGSMNKRVKVAKLPKKVDSFSPKKKKNTTSSGSSESDSMS-QNDKKKDS 63

Query: 444 SL 449
           SL
Sbjct: 64  SL 65


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 184 FTLSPPLSILCFFSVLFV 131
           F +S P+S+LC FS+ F+
Sbjct: 616 FAVSIPVSLLCIFSIWFL 633


>SPBC13A2.01c |||nuclear cap-binding complex small
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 182

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = +1

Query: 268 EEIRTRGAAKTGAGLRATDDQRQ*PGRGLRSQTERRTSSYRLGNRQVPSELP 423
           EE R  G   +G  +R    +   PGRG  ++  + TSS +L N    S  P
Sbjct: 112 EEGRQYGRGASGGQVRDEMREEFDPGRGGYAKNRQPTSSRQLANYSGISSAP 163


>SPBC530.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 815

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/39 (23%), Positives = 22/39 (56%)
 Frame = +1

Query: 577 DGGPEERLARTAGPRTEGRRGRTQKSRSSIYDGNKSSRP 693
           + GP++ + + +   T+  +  T+  + S++DGN  + P
Sbjct: 652 NNGPQQSIDKESNSNTQLPQVETEGQQQSVFDGNIGTIP 690


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,617,663
Number of Sequences: 5004
Number of extensions: 47343
Number of successful extensions: 166
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 166
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)