Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26d17
(760 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_1094 + 26032135-26032164,26032975-26033152,26033234-260340... 32 0.57
01_01_0409 - 3084821-3084988,3085069-3085155,3085270-3085476,308... 31 1.00
11_06_0264 - 21785450-21786928 29 3.0
08_02_1147 - 24688686-24689729,24689875-24690036,24690339-246903... 29 4.0
03_05_1076 + 30180923-30181150,30181746-30181913,30182063-301822... 29 4.0
04_04_1450 + 33692130-33693191 29 5.3
04_01_0253 - 3358090-3359052 29 5.3
02_02_0284 - 8547126-8547187,8547306-8547395,8547810-8547861,854... 29 5.3
02_02_0526 + 11185825-11186832,11187795-11187869 28 7.0
12_02_1280 - 27517683-27517871,27517955-27518029,27518155-275183... 28 9.3
07_03_1762 - 29299328-29299437,29299782-29299871,29300487-293012... 28 9.3
>12_02_1094 +
26032135-26032164,26032975-26033152,26033234-26034017,
26034135-26034216,26034968-26035177
Length = 427
Score = 31.9 bits (69), Expect = 0.57
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
Frame = +2
Query: 353 LEARQREERRRIGLEIDKYR-QNYQRTEDRREFDLNDPDVLKKQLP-PRASDGDPVGMSS 526
L+ R R E +GL++ K ++ +D E P+ K+ P PR GD G +
Sbjct: 252 LQIRTRREIAALGLQLGKMNIASWASKDDDDELPRASPE--KRPRPRPRPHSGDGGGEAK 309
Query: 527 AQKFEGEDLNYEERKKLMAAQKNAWLEQQVQ 619
++FE + ++E K A + E ++Q
Sbjct: 310 KREFEARAMAWQETHKCKLALRFQRKEVKIQ 340
>01_01_0409 -
3084821-3084988,3085069-3085155,3085270-3085476,
3085904-3085985,3086085-3086275,3086410-3086616,
3086709-3086871,3087905-3087960,3088035-3088148,
3088599-3089807
Length = 827
Score = 31.1 bits (67), Expect = 1.00
Identities = 14/32 (43%), Positives = 19/32 (59%)
Frame = -3
Query: 104 SSSKSVPISLTSVRISAPFPSLGSAPFPSKIN 9
SS K VP++ + R AP P+ +AP PS N
Sbjct: 15 SSRKPVPVAAAAARRPAPSPAAAAAPAPSPSN 46
>11_06_0264 - 21785450-21786928
Length = 492
Score = 29.5 bits (63), Expect = 3.0
Identities = 17/67 (25%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
Frame = -3
Query: 212 H*RSYFSFLVHTVSSSLYSVLLFCPVRWLFVISAFFSSSKSVPISLTSVRISAPFP-SLG 36
H R Y++ +VH + L+ +L C + ++ ++S S P + +S+P P
Sbjct: 266 HHRQYWTSIVHNHKNGLFYLLRHCGSIFSLDLTGGGAASSSSPSPVARTVLSSPSPHQYS 325
Query: 35 SAPFPSK 15
S P P++
Sbjct: 326 SGPKPTQ 332
>08_02_1147 -
24688686-24689729,24689875-24690036,24690339-24690368,
24690713-24690860,24691302-24691489
Length = 523
Score = 29.1 bits (62), Expect = 4.0
Identities = 28/106 (26%), Positives = 52/106 (49%), Gaps = 11/106 (10%)
Frame = +2
Query: 335 SNLAAVLEARQREERRRIGLEIDKYRQNYQRTEDRREFDLN----DPDVLKKQLPPR--- 493
S L + + RQ ++ R G ++ R +E+ RE L D +V ++Q R
Sbjct: 400 SELGSEGQRRQESQQGRNGPTFNRRRGVQHMSEEEREARLRQMQADAEVHEEQRWSRLKK 459
Query: 494 ASDGDPVGMSS--AQKFEGEDLNYEERKKLMAAQK--NAWLEQQVQ 619
A+D D +S A +F G++ EE+K + +K +A +E+ ++
Sbjct: 460 AADDDAKEAASVNANQFRGKNFLEEEKKSIFGTEKGGSATIEESIR 505
>03_05_1076 +
30180923-30181150,30181746-30181913,30182063-30182281,
30182827-30182872,30183708-30183943,30184065-30184079,
30185749-30186061,30186189-30186403,30186598-30186600
Length = 480
Score = 29.1 bits (62), Expect = 4.0
Identities = 24/80 (30%), Positives = 35/80 (43%), Gaps = 1/80 (1%)
Frame = +2
Query: 371 EERRRIGLEIDKYRQNYQRTEDRREFDLNDPDVLKKQLPPRASD-GDPVGMSSAQKFEGE 547
EE GL K+R+ +QR R EF +D D ++ R S G G ++ E E
Sbjct: 373 EEEEEKGLSRSKHRRKHQRR--RHEFSDDDDDDDEESSGSRKSKLGGAAGDDDDEEEEDE 430
Query: 548 DLNYEERKKLMAAQKNAWLE 607
+ EE + +K LE
Sbjct: 431 GIGGEELRASDIVRKEMGLE 450
>04_04_1450 + 33692130-33693191
Length = 353
Score = 28.7 bits (61), Expect = 5.3
Identities = 15/40 (37%), Positives = 19/40 (47%)
Frame = +2
Query: 467 VLKKQLPPRASDGDPVGMSSAQKFEGEDLNYEERKKLMAA 586
V LPP A+ G + + FE D+ ER KLM A
Sbjct: 268 VYHDSLPPEANKGRNAAAMAREVFEAADMYAMERLKLMCA 307
>04_01_0253 - 3358090-3359052
Length = 320
Score = 28.7 bits (61), Expect = 5.3
Identities = 16/49 (32%), Positives = 22/49 (44%)
Frame = +1
Query: 532 KIRR*RFKLRRTEEADGGPEERLARTAGPRTEGRRGRTQKSRSSIYDGN 678
+ RR R + T A G T G R++GRRGR + R G+
Sbjct: 64 RCRRRRRRRETTSRATDGTMTTTTNTGGVRSKGRRGRGRPCRCDAGGGD 112
>02_02_0284 -
8547126-8547187,8547306-8547395,8547810-8547861,
8548209-8548284,8550513-8550632,8553334-8553423,
8553842-8554024,8554125-8554185,8554437-8554477,
8554563-8554727,8555699-8555776,8556137-8556282
Length = 387
Score = 28.7 bits (61), Expect = 5.3
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Frame = +2
Query: 395 EIDKYRQNYQRTEDRREFDLNDPDV-LKKQLPPRASDGDPVGMSSAQKFEGEDLNYEERK 571
E+DK R++Y ++ D D D +K+ PP SDG P S ++ G R
Sbjct: 199 EVDKKRRSYSPAN--KDGDRRDADNGYEKRSPPADSDGSPPHRRSPRQSSGSPPGSRSRC 256
Query: 572 KLM 580
K +
Sbjct: 257 KFV 259
>02_02_0526 + 11185825-11186832,11187795-11187869
Length = 360
Score = 28.3 bits (60), Expect = 7.0
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = +2
Query: 356 EARQREERRRIGLEIDKYRQNYQRTEDRR 442
E Q +RRR+ LE+DK R ++ + RR
Sbjct: 175 EEEQHRQRRRLELELDKKRLEDRKAQTRR 203
>12_02_1280 -
27517683-27517871,27517955-27518029,27518155-27518318,
27518424-27518538,27518783-27519074,27519162-27519318,
27519438-27519510,27520309-27520377,27520471-27520694,
27520800-27520981,27521067-27522064,27522335-27522580
Length = 927
Score = 27.9 bits (59), Expect = 9.3
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +3
Query: 204 SSMRETGKLV*MFRSSSVRSKRRDQNERSSKDGSWPSRNR*SKT 335
S R+TG R+S+ RD N R+SK G +R+R ++T
Sbjct: 193 SRSRDTGAEANGSRASTREDSDRDSNGRNSKHGRHATRSRDNET 236
>07_03_1762 -
29299328-29299437,29299782-29299871,29300487-29301291,
29301956-29303278
Length = 775
Score = 27.9 bits (59), Expect = 9.3
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Frame = +2
Query: 401 DKYRQNYQRTEDRREFDLNDPDVL---KKQLPPRASDGDPVGMSSAQKFEGEDLNYEERK 571
D+ ++ E+ E DL D D L K P R G P S ++ + +D +YEE +
Sbjct: 67 DESDADFVGDEEEEEEDLEDEDDLEEVKAPRPKRPPKGKPPPRSRRRRQKDDDDDYEEEE 126
Query: 572 K 574
+
Sbjct: 127 E 127
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,847,379
Number of Sequences: 37544
Number of extensions: 342186
Number of successful extensions: 1172
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1172
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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