Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d15
         (700 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces p...    27   2.0  
SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces po...    27   2.6  
SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   4.5  
SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|c...    26   6.0  
SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr...    25   7.9  
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc...    25   7.9  

>SPCC1620.12c |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 595

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 10/43 (23%), Positives = 22/43 (51%)
 Frame = +2

Query: 266 NENINPSLSNSFKNHSNINISSCNQSLQKLSISANQSCNNSAL 394
           N+     L +S+K+H ++N +  +  +Q +    NQ C   ++
Sbjct: 78  NQTEFEQLRDSYKSHGDLNSAINDSRIQSIIFELNQQCEKESI 120


>SPCC1235.01 ||SPCC320.02c|sequence orphan|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 658

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/54 (31%), Positives = 24/54 (44%)
 Frame = +2

Query: 266 NENINPSLSNSFKNHSNINISSCNQSLQKLSISANQSCNNSALSNNKTPTRNEN 427
           N N N +  N   N+S  N     QS   L   A+   N+S+ ++NK    N N
Sbjct: 564 NNNNNSNSGNYNNNNSGNNNQQHQQSSSSLQGLASSFLNSSSGNSNKQNYNNNN 617



 Score = 26.6 bits (56), Expect = 3.4
 Identities = 15/54 (27%), Positives = 25/54 (46%)
 Frame = +2

Query: 266 NENINPSLSNSFKNHSNINISSCNQSLQKLSISANQSCNNSALSNNKTPTRNEN 427
           + N N S +NS  +++N N S+    + KLS  +  + +    S N     N N
Sbjct: 517 SNNSNSSNNNSNTSNNNSNTSNNESMVSKLSSLSGMASSFLGSSGNNNNNNNSN 570


>SPAC4D7.07c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 600

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
 Frame = +2

Query: 236 PLQRWAKKGCNENINPSLSNS-FKNHSNINISSCNQSLQKLS 358
           PL R  +   N NI+ ++SN+ FK      +  C Q+L+ +S
Sbjct: 47  PLSRGLQSDVNSNISRNISNTFFKKSIFFFVYYCKQALEFIS 88


>SPCC4B3.04c |nte1||lysophospholipase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1316

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +3

Query: 477 QHQPQTKHQRHLIKLIDSSHQGVIQIMTYATIC*VVMMTKVRKPHKQ 617
           QHQP  KH    + ++ SS  G++ + +      + +M K  K  +Q
Sbjct: 777 QHQPHEKHSIRTLAIVPSSSTGLLILFSQKLTSVLSVMGKSVKVLRQ 823


>SPCC285.10c |||SPRY domain protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 382

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 137 INKHNYNSFIKNKSFQSHLNIYECFIKLN 51
           I    YN ++KNK+  S L   EC ++ N
Sbjct: 129 IPNQEYNCYVKNKTELSFLGNEECCMQTN 157


>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1072

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -1

Query: 187  QIVKLGHDTTKLDLSYKLINTII 119
            +IV  GH+ TKLD+S + + +II
Sbjct: 1042 EIVNGGHEGTKLDISVQDLKSII 1064


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,493
Number of Sequences: 5004
Number of extensions: 49972
Number of successful extensions: 168
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)