Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26d15
(700 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical pr... 30 1.4
U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical pr... 30 1.4
U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog (... 30 1.8
U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog (... 30 1.8
U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome regu... 28 5.6
U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome regu... 28 5.6
Z49913-5|CAA90146.1| 404|Caenorhabditis elegans Hypothetical pr... 28 7.4
U41109-3|ABC48250.1| 203|Caenorhabditis elegans Hypothetical pr... 28 7.4
U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protei... 27 9.8
U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical pr... 27 9.8
>U41271-3|AAP31439.1| 577|Caenorhabditis elegans Hypothetical
protein C46H3.2b protein.
Length = 577
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 332 CNQSLQKLSISANQSCNNSALSNNKTPTRNEN 427
CN L +S S N S NS+LSN++ P NEN
Sbjct: 486 CNVGLHHIS-SGNLSSFNSSLSNDQFPFANEN 516
>U41271-2|AAA82444.3| 713|Caenorhabditis elegans Hypothetical
protein C46H3.2a protein.
Length = 713
Score = 30.3 bits (65), Expect = 1.4
Identities = 16/32 (50%), Positives = 20/32 (62%)
Frame = +2
Query: 332 CNQSLQKLSISANQSCNNSALSNNKTPTRNEN 427
CN L +S S N S NS+LSN++ P NEN
Sbjct: 622 CNVGLHHIS-SGNLSSFNSSLSNDQFPFANEN 652
>U97407-3|AAM15558.1| 1069|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform b protein.
Length = 1069
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 287 LSNSFKNHSNINISSCNQ-SLQKLSISANQSCNNSALSNNKTPT 415
L N N+++ SC Q+LSIS+N S + NNKT T
Sbjct: 228 LKNELDRIINVDLDSCQALCTQRLSISSNDFNCKSFMYNNKTRT 271
>U97407-2|AAB52479.2| 1065|Caenorhabditis elegans Nompa homolog
(drosophila nompa:no mechanoreceptor potential a)
protein 1, isoform a protein.
Length = 1065
Score = 29.9 bits (64), Expect = 1.8
Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +2
Query: 287 LSNSFKNHSNINISSCNQ-SLQKLSISANQSCNNSALSNNKTPT 415
L N N+++ SC Q+LSIS+N S + NNKT T
Sbjct: 228 LKNELDRIINVDLDSCQALCTQRLSISSNDFNCKSFMYNNKTRT 271
>U39851-7|AAM81115.1| 668|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform a
protein.
Length = 668
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 536 SRSNSNYDLCHYMLSRDDDKSEETPQTAAGEAIGRALNDTEPGRLLQYT 682
S S SNY+ +L RD+ S E+ A G + LN L QYT
Sbjct: 466 SSSVSNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQEVFNELKQYT 514
>U39851-6|AAM81116.1| 965|Caenorhabditis elegans Proteasome
regulatory particle,non-atpase-like protein 2, isoform b
protein.
Length = 965
Score = 28.3 bits (60), Expect = 5.6
Identities = 18/49 (36%), Positives = 23/49 (46%)
Frame = +2
Query: 536 SRSNSNYDLCHYMLSRDDDKSEETPQTAAGEAIGRALNDTEPGRLLQYT 682
S S SNY+ +L RD+ S E+ A G + LN L QYT
Sbjct: 466 SSSVSNYEKVREVLQRDEAVSGESAGIAMGLIMAGHLNQEVFNELKQYT 514
>Z49913-5|CAA90146.1| 404|Caenorhabditis elegans Hypothetical
protein ZK938.7 protein.
Length = 404
Score = 27.9 bits (59), Expect = 7.4
Identities = 16/31 (51%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
Frame = +2
Query: 245 RWAKKGCNENINPSLSNSFKNHSNI-NISSC 334
R AKK C NIN + KN SNI SSC
Sbjct: 160 RLAKKACRSNIN-QYNRYLKNKSNICTFSSC 189
>U41109-3|ABC48250.1| 203|Caenorhabditis elegans Hypothetical
protein F52E1.14 protein.
Length = 203
Score = 27.9 bits (59), Expect = 7.4
Identities = 15/44 (34%), Positives = 21/44 (47%)
Frame = -3
Query: 134 NKHNYNSFIKNKSFQSHLNIYECFIKLNDDE*IQKTRSQVALDS 3
N + N F N F SH Y +KL D K ++ VAL++
Sbjct: 49 NYFSLNGFCVNNDFMSHTLTYSSHVKLADSS--VKVKTDVALNT 90
>U49941-8|AAB53876.1| 2427|Caenorhabditis elegans Spectrin protein 1
protein.
Length = 2427
Score = 27.5 bits (58), Expect = 9.8
Identities = 14/65 (21%), Positives = 28/65 (43%)
Frame = +2
Query: 230 RGPLQRWAKKGCNENINPSLSNSFKNHSNINISSCNQSLQKLSISANQSCNNSALSNNKT 409
+G L++ +KG N L N + HS + I+ L +L++ + + N++
Sbjct: 2213 KGQLRQIEEKGAMLERNLILDNRYTEHSTVGIAQAWDQLDQLAMRMQHNLEQQIQARNQS 2272
Query: 410 PTRNE 424
E
Sbjct: 2273 GVSEE 2277
>U40415-5|AAK39251.1| 655|Caenorhabditis elegans Hypothetical
protein K02G10.5 protein.
Length = 655
Score = 27.5 bits (58), Expect = 9.8
Identities = 13/23 (56%), Positives = 13/23 (56%)
Frame = -3
Query: 674 GGGDLVQYHSELYLLLLRQLFVG 606
G D H EL LLLL Q FVG
Sbjct: 165 GSSDTFSAHRELLLLLLSQAFVG 187
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,322,195
Number of Sequences: 27780
Number of extensions: 270470
Number of successful extensions: 941
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 941
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1613473434
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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