Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d12
         (481 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces p...    27   1.1  
SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual    26   2.6  
SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor Vp...    25   5.9  
SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    25   5.9  

>SPAC19B12.05c |fcp1||CTD phosphatase Fcp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 723

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/58 (22%), Positives = 29/58 (50%)
 Frame = +1

Query: 190 SPVRSLLKSRSHMSRKQNGTLKDL*AVMHSHRNNVKMTNQIRIAKRIYTLLVRVKEQV 363
           +P  +LL +R H   +    LKD+ AV +   N++   +       +  ++ ++K++V
Sbjct: 433 TPSHTLLHNRDHELERLEKVLKDIHAVYYEEENDISSRSGNHKHANVGLIIPKMKQKV 490


>SPBC16D10.02 |trm11||tRNA |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 452

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -2

Query: 402 ETNFDDFLQHPYFYLLFNSYQ 340
           E   DD   HPY  L++NS Q
Sbjct: 387 EYGIDDIPSHPYLSLIYNSIQ 407


>SPBC29A10.11c |vps902|vps9b|guanyl-nucleotide exchange factor
           Vps902 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 402

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 213 ISEPHVPKTKRDTERFISRNAQSQEQRENDESNTDRQTNL 332
           + E H P++K +T   ++ +  +  Q   +E N D   NL
Sbjct: 183 LDEQHTPRSKINTFMTVNSSILNASQLPQEELNADSLLNL 222


>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -2

Query: 375 HPYFYLLFNSYQ*SIDSFGDPYLIRHFHVVPVTVHY 268
           HPYF L+  + + +  S+  PYL       P+++ +
Sbjct: 203 HPYFELIIQNLEKNAKSYWLPYLTIMLSTGPLSISF 238


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,782,086
Number of Sequences: 5004
Number of extensions: 33945
Number of successful extensions: 85
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)