Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d12
         (481 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0505 + 25719959-25720052,25721548-25722266                       28   4.5  
08_02_1112 - 24382294-24382854                                         27   6.0  
07_01_0183 + 1297445-1297796,1297896-1298424,1298548-1298630,129...    27   6.0  
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891...    27   7.9  
01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132     27   7.9  

>04_04_0505 + 25719959-25720052,25721548-25722266
          Length = 270

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 161 RLITIIKTFYLRCGPYLNLGATCPENKTGH 250
           RLI++   +Y+RC P L  GA  P   TGH
Sbjct: 226 RLISLNYGWYVRCTPSLVGGAASPIPCTGH 255


>08_02_1112 - 24382294-24382854
          Length = 186

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +1

Query: 292 VKMTNQIRIAKRIYTLLVRVKEQVKIW 372
           V M NQ+R  + +YT+    K Q K+W
Sbjct: 128 VAMVNQVRSNRVVYTIRGTFKVQAKLW 154


>07_01_0183 +
           1297445-1297796,1297896-1298424,1298548-1298630,
           1298901-1298989,1299091-1299164,1300196-1300246,
           1300439-1300515,1302199-1302863
          Length = 639

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 9/39 (23%), Positives = 20/39 (51%)
 Frame = +3

Query: 222 PHVPKTKRDTERFISRNAQSQEQRENDESNTDRQTNLYF 338
           PH+  +  D    +  + Q Q+Q++  + +  +Q  L+F
Sbjct: 25  PHMASSTMDEHHHVHHHQQQQQQQQQQQHHQQQQHGLFF 63


>08_02_0269 +
           15087481-15087893,15087978-15088074,15089068-15089112,
           15089281-15089492,15090809-15090911,15091002-15091097,
           15091405-15091473,15093341-15093588,15093640-15093759,
           15093847-15094284,15094503-15094620,15095262-15095303,
           15097099-15097161,15097365-15097475,15097730-15097801,
           15097875-15097993,15099682-15099745,15100238-15101860
          Length = 1350

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 14/34 (41%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
 Frame = -2

Query: 321 GDPYLIRHFHVVPV--TVHYGL*IFQCPVLFSGH 226
           G P +I H   V V  T+ +GL +FQC     GH
Sbjct: 323 GSPDIIHHARYVGVLSTIRHGLMVFQCNKESCGH 356


>01_03_0263 + 14397549-14412911,14413023-14413787,14413950-14414132
          Length = 5436

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 240  KRDTERFISRNAQSQEQRENDESNT 314
            ++D   F + N + +EQ END+SNT
Sbjct: 3273 EKDYTGFENLNDEGEEQEENDKSNT 3297


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,003,503
Number of Sequences: 37544
Number of extensions: 175857
Number of successful extensions: 321
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 315
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 321
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 991020332
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)