Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d12
         (481 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       24   0.74 
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   1.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    22   3.0  
DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               21   5.2  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    21   5.2  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 24.2 bits (50), Expect = 0.74
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 453 VYYETFVSLSVHQNSVFETNFDDFLQH 373
           V +ET V L   Q  +F   F D +QH
Sbjct: 372 VDHETMVPLGERQTLMFSATFPDEVQH 398


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.0 bits (47), Expect = 1.7
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 230 DMWLRDLSKDRTGDKTF 180
           D+W+ D+S   +GD TF
Sbjct: 123 DIWVPDISVYNSGDMTF 139


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.2 bits (45), Expect = 3.0
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = -3

Query: 383 FCNTHIFTCSLTRTNKV 333
           FC T ++   LT+TN++
Sbjct: 730 FCFTVVYAALLTKTNRI 746


>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = -2

Query: 375 HPYFYLLFNSYQ*SI 331
           HPY +L++NS+  SI
Sbjct: 466 HPYDHLVWNSWMPSI 480


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 7/15 (46%), Positives = 12/15 (80%)
 Frame = -3

Query: 212 LSKDRTGDKTFLLLL 168
           L  D+ GDKTF++++
Sbjct: 65  LDTDQWGDKTFVIIM 79


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,985
Number of Sequences: 438
Number of extensions: 2816
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13051674
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)