Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d11
         (694 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH comple...    80   3e-16
SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|...    26   4.5  
SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4 |S...    26   5.9  
SPAC9E9.10c |cbh1|cbh|centromere binding protein |Schizosaccharo...    26   5.9  
SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|ch...    25   7.9  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    25   7.9  
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha...    25   7.9  

>SPBC13G1.13 |tfb2|SPBC31F10.01|transcription factor TFIIH complex
           subunit Tfb2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 447

 Score = 80.2 bits (189), Expect = 3e-16
 Identities = 51/154 (33%), Positives = 75/154 (48%), Gaps = 1/154 (0%)
 Frame = +1

Query: 235 LYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQTYAKEQAKACTTLSEL 414
           LY  P  CLAV+R LP LAR +V+ +LF   PV  +    W+  +    Q+++   L  +
Sbjct: 22  LYQKPAACLAVFRLLPILARQYVMSMLFNPMPVALSDFDLWIKLSSKVYQSESFNKLVRM 81

Query: 415 SVWQEAPIPGGMPGWMLAQSFKKNLKVSLLGGGRAWSMS-SSLEPDGKARDVSFLDAYAL 591
            ++Q     G      L   F+K    +L GGG   S      + D     V FLDAYA 
Sbjct: 82  HIFQ---FDGQY--ITLNSEFRKQFITALTGGGNHNSFGVPCTDEDKHLVTVDFLDAYAK 136

Query: 592 ERWECVLHYMVGSAQTEGISADAVRILLHAGLMT 693
           E WE +LH+MVG+ + +      + +L   GLM+
Sbjct: 137 ETWETILHFMVGTPEAKFPGEGVLSLLKRGGLMS 170


>SPAC5H10.01 |||DUF1445 family protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 301

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/48 (33%), Positives = 23/48 (47%)
 Frame = +3

Query: 228 RDSLQLPHYMSRCISRITRASTSLRNPLAVR*AASPTGSCHILGLANI 371
           +D  +LP Y  R I++   A   +RN L  +   S TG C     AN+
Sbjct: 29  KDECRLPSYSERAITKPVEARKLIRNRLMTK---STTGWCEGYIQANL 73


>SPCC31H12.08c |ccr4|SPCC5E4.02c|CCR4-Not complex subunit Ccr4
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 690

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 19/66 (28%), Positives = 32/66 (48%)
 Frame = +1

Query: 442 GGMPGWMLAQSFKKNLKVSLLGGGRAWSMSSSLEPDGKARDVSFLDAYALERWECVLHYM 621
           G  P W L+ S++K+L +  LGG  A  +    E D +  D  F    +L+ ++ V H+ 
Sbjct: 355 GYTPSWALSWSYRKDLIMQELGGYNA-DIICLQEVDVENYDTFFAPQMSLKGYKGV-HFP 412

Query: 622 VGSAQT 639
               +T
Sbjct: 413 KSRVRT 418


>SPAC9E9.10c |cbh1|cbh|centromere binding protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 331 VPQAVVTSWVSQTYAKEQAKACTTLSEL 414
           +PQ  VT W  +TY K+ ++  +T+SE+
Sbjct: 27  IPQKEVTEWFRKTYNKDLSQ--STISEI 52


>SPAC31G5.09c |spk1||MAP kinase Spk1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 372

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +1

Query: 238 YNYPTICLAVYRELPELARHF 300
           +N+P  CL   RE+ +L RHF
Sbjct: 73  FNHPVFCLRTLREI-KLLRHF 92


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 17/53 (32%), Positives = 30/53 (56%)
 Frame = +1

Query: 478 KKNLKVSLLGGGRAWSMSSSLEPDGKARDVSFLDAYALERWECVLHYMVGSAQ 636
           K++  +S +      S+SSSL PD  A+ +  L + AL  W C ++ ++G+ Q
Sbjct: 361 KRSFSMSEIVTSMQMSISSSLSPDQCAKAIELL-SKALPAW-CTIN-LLGNIQ 410


>SPAPJ696.02 |||actin cortical patch component Lsb4
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = -3

Query: 602 SQRSSAYASRNDTSRAFPSGSSDDD 528
           + RSS+Y+ R D+ R+  S + DDD
Sbjct: 255 ADRSSSYSRRGDSYRSNRSRAHDDD 279


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,515,473
Number of Sequences: 5004
Number of extensions: 51092
Number of successful extensions: 155
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)