Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d11
         (694 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical...    40   0.002
M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.        31   1.0  
AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical ...    31   1.0  
Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81584-7|CAE17905.1|  202|Caenorhabditis elegans Hypothetical pr...    30   1.8  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical pr...    29   3.2  
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr...    27   9.6  
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p...    27   9.6  
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ...    27   9.6  

>AL132862-18|CAB70230.2|  481|Caenorhabditis elegans Hypothetical
           protein Y73F8A.24 protein.
          Length = 481

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 36/143 (25%), Positives = 69/143 (48%), Gaps = 1/143 (0%)
 Frame = +1

Query: 196 EYLKSRSPQFLETLYNYPTICLAVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQTYA 375
           ++L +  P+  + L   P+    +YR LP +A+   I+L++ +   P A   S V +T  
Sbjct: 25  DFLITIPPKTRQRLLQKPSCAFFIYRMLPPIAQQTTIQLIW-KGSFPTA---SDVEET-- 78

Query: 376 KEQAKACTTLSELSVWQEAPIPGGMPGWMLAQSFKKN-LKVSLLGGGRAWSMSSSLEPDG 552
           KE       L +L +       G +    +   +K++ +  ++LG  +  S+   LEP+ 
Sbjct: 79  KEIEDQVKLLKDLGLVHRQTTDGKLN---IDTDYKRSYMYAAMLGAAQISSLV--LEPNE 133

Query: 553 KARDVSFLDAYALERWECVLHYM 621
             R    ++  A+ERW+C+L Y+
Sbjct: 134 GNRRGKDVEKKAVERWDCILRYL 156


>M93256-1|AAB59181.1| 1110|Caenorhabditis elegans tra-1 protein.
          Length = 1110

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 608  THSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPP 504
            TH+  S+    +   + +F S   +DD ++ALPPP
Sbjct: 1046 THADNSALQLQQEQPTSSFSSWFPEDDPIYALPPP 1080


>AL117202-5|CAB61040.2| 1109|Caenorhabditis elegans Hypothetical
            protein Y47D3A.6a protein.
          Length = 1109

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 608  THSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPP 504
            TH+  S+    +   + +F S   +DD ++ALPPP
Sbjct: 1045 THADNSALQLQQEQPTSSFSSWFPEDDPIYALPPP 1079


>Z67754-1|CAA91751.1|  483|Caenorhabditis elegans Hypothetical
           protein C34E11.1 protein.
          Length = 483

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/56 (33%), Positives = 26/56 (46%)
 Frame = -3

Query: 602 SQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSNDTLRFFLNDCASIQPGMPPGM 435
           S RSS  A+ N  S+  PS S  DD + A+PPPS     +     + +    P  M
Sbjct: 266 SSRSSQPAATNK-SKPNPSKSFFDDPIPAIPPPSGAPSNYVAPPLSPVSKNAPRNM 320


>Z81584-7|CAE17905.1|  202|Caenorhabditis elegans Hypothetical
           protein T04C12.7 protein.
          Length = 202

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/89 (26%), Positives = 43/89 (48%), Gaps = 4/89 (4%)
 Frame = -3

Query: 551 PSGSSDDDMLHALPPPSNDTLRF-FLNDCASIQPGMPPGMGASCHTESSDSVVH--AFAC 381
           P  S++ D+ +A P   +   RF F   C  I  G+   M    + E+ D++ +  AF+ 
Sbjct: 97  PQTSTETDIKNATPLKMHRISRFTFCCLCMCIPIGILWTMQIYDNHENCDNLTYWTAFSV 156

Query: 380 SLAYVCETQDVTTACGTG-CSTNSKRITK 297
           S+ Y+C    + + C  G C   + R++K
Sbjct: 157 SILYLCWMCLMVSVCLLGCCMVGASRVSK 185


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 24/120 (20%), Positives = 44/120 (36%)
 Frame = -3

Query: 677 CSSMRTASALMPSVCALPTM*CSTHSQRSSAYASRNDTSRAFPSGSSDDDMLHALPPPSN 498
           C+S    +A     CA     CS  S  SS+ ++ + +S +  + +S DD   +    S+
Sbjct: 18  CTSTFYTTAQKTQYCASTCSLCSDSSDSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSS 77

Query: 497 DTLRFFLNDCASIQPGMPPGMGASCHTESSDSVVHAFACSLAYVCETQDVTTACGTGCST 318
                  +D  +          +S  + +S S   +   +      +   TT C    ST
Sbjct: 78  SASSTSSSDTTTADSSSTTSSDSSTTSSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSFST 137


>Z67882-3|CAA91800.2| 1324|Caenorhabditis elegans Hypothetical protein
            F22E10.2 protein.
          Length = 1324

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/58 (32%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
 Frame = +1

Query: 262  AVYRELPELARHFVIRLLFVEQPVPQAVVTSWVSQT-YAKEQAKACTTLSELSVWQEA 432
            A Y + P  A   +I  L  + P  +AVV   + Q  YA     AC T+  ++ WQ A
Sbjct: 852  AAYFDNPAHAPGSLITRLAADPPCVKAVVDGRMMQVVYATAAVIACVTIGFINCWQVA 909


>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
            F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 515  GRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 613
            G  + R    +T   GTC  W  T WSA S  C
Sbjct: 1224 GTASDRPASHQTCNLGTCPFWRNTDWSACSVSC 1256


>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
            protein F25H8.3 protein.
          Length = 2165

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 13/33 (39%), Positives = 15/33 (45%)
 Frame = +2

Query: 515  GRGACRRRWSRTGRPGTCRSWTRTRWSAGSACC 613
            G  + R    +T   GTC  W  T WSA S  C
Sbjct: 1224 GTASDRPASHQTCNLGTCPFWRNTDWSACSVSC 1256


>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
            protein F52G3.1 protein.
          Length = 1172

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 15/42 (35%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
 Frame = -3

Query: 509  PPSNDTLR-----FFLNDCASIQPGMPPGMGASCHTESSDSV 399
            PPSN T       FF N+      G PPG+ A+ H+   D +
Sbjct: 1062 PPSNGTSHQDNGPFFFNNGNRAPIGRPPGLSAAGHSAQLDMI 1103


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,431,761
Number of Sequences: 27780
Number of extensions: 326856
Number of successful extensions: 1009
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 946
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1009
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1592382278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)