Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d09
         (576 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|...    27   2.6  
SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces pom...    27   2.6  
SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr 3...    26   3.4  
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom...    25   7.9  
SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces pom...    25   7.9  

>SPCC830.03 |||AAA family ATPase Grc3 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 736

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 9/12 (75%), Positives = 11/12 (91%)
 Frame = +3

Query: 507 MSYLYFECNLER 542
           +SYLYF CNL+R
Sbjct: 542 LSYLYFNCNLQR 553


>SPAC4H3.13 |||transcription factor Pcc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 88

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -2

Query: 542 PFKITLKIQIRHKFYVLRCENHLAPDR 462
           P K+T+K+ +  +    RC   LAPDR
Sbjct: 8   PHKVTVKVPLASRVDAERCLQVLAPDR 34


>SPCC24B10.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 455

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 16/59 (27%), Positives = 25/59 (42%)
 Frame = +3

Query: 144 FIPIGISLLIEQFRRKMICLSLYALIASATLLACVPVCYKRFEMQKFLQCIKK*VNDVD 320
           F+P+  S +      K+   + YA +  A      PV  K F  Q  +QC+     DV+
Sbjct: 64  FVPVRDSAVASISTSKVQDFNSYATLTEAQKKTATPVEEKNFLNQIVIQCLDSLETDVE 122


>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 163

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -3

Query: 508 INFTCYVVKII*HPIALDS 452
           I+F+CY+V  + HP AL S
Sbjct: 139 ISFSCYIVLKMVHPYALPS 157


>SPBC776.13 |cnd1||condensin subunit Cnd1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1158

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 10/34 (29%), Positives = 19/34 (55%)
 Frame = -3

Query: 253 TGTQASKVADAIRAYRERQIIFRRNCSISSEIPI 152
           TGT     ++A+   RER++++  N  +S   P+
Sbjct: 890 TGTSEDDFSEAMTFIRERELLYGENSLLSRFAPL 923


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,231,787
Number of Sequences: 5004
Number of extensions: 43673
Number of successful extensions: 115
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 115
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 246098644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)