Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d09
         (576 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0250 - 15845079-15845345,15846303-15846397,15846563-158466...    29   3.5  
02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505     28   4.6  
07_03_0207 - 15183894-15184685,15184993-15185078,15186042-151861...    28   6.1  
12_02_0850 + 23651496-23651801,23651893-23651986,23652280-236523...    27   8.1  

>03_03_0250 -
           15845079-15845345,15846303-15846397,15846563-15846671,
           15846981-15847059,15847286-15847355,15847632-15847730,
           15847906-15847930
          Length = 247

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = -3

Query: 376 LARTRYSPPPRAP*NRSCKSTSFTYFLM 293
           L  TR +PPP +P      +TSFT+F++
Sbjct: 169 LPYTRTAPPPHSPPATIALATSFTFFMV 196


>02_05_0675 + 30804143-30804384,30804582-30804752,30806277-30806505
          Length = 213

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 10/19 (52%), Positives = 14/19 (73%)
 Frame = -2

Query: 515 IRHKFYVLRCENHLAPDRF 459
           I HK++ +R  NHL PDR+
Sbjct: 85  IPHKYHPMRGRNHLIPDRY 103


>07_03_0207 -
           15183894-15184685,15184993-15185078,15186042-15186144,
           15186890-15186971,15187112-15187203,15187295-15187383,
           15187467-15187547,15188610-15188724,15188894-15188935
          Length = 493

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +1

Query: 322 CMTCFTALVAAGCIACGPIVLDTYWPIKKSKEKKNSSPVCKS 447
           C+ C  A V   CI CG +       +K  + KK   P+C++
Sbjct: 442 CVICLDAPVEGACIPCGHMA-GCMSCLKDIESKKWGCPICRA 482


>12_02_0850 +
           23651496-23651801,23651893-23651986,23652280-23652398,
           23652456-23652578,23652919-23652978,23653473-23653523
          Length = 250

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/81 (23%), Positives = 41/81 (50%)
 Frame = +3

Query: 144 FIPIGISLLIEQFRRKMICLSLYALIASATLLACVPVCYKRFEMQKFLQCIKK*VNDVDL 323
           ++PI I +  + FR + +CL+ +A++   T  A  P C+     +K +  +   V+D+ +
Sbjct: 75  YLPIWIYVCRKDFRSRKLCLTPHAIVYKVTRPATFP-CFGVLRNEKHV--VLHSVSDIVV 131

Query: 324 HDLFHGARGGGLYRVRANSFG 386
              +  +   G+Y +R  + G
Sbjct: 132 EQGYLQSL-FGIYSIRFENIG 151


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,862,296
Number of Sequences: 37544
Number of extensions: 268903
Number of successful extensions: 717
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 707
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 717
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1340735508
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)