Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d09
         (576 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical pr...    31   0.44 
AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical...    28   4.1  
AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical ...    28   4.1  
AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical ...    28   4.1  
U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical p...    27   9.5  

>U40410-5|AAA81394.3| 1199|Caenorhabditis elegans Hypothetical protein
            C54G7.4 protein.
          Length = 1199

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 1/49 (2%)
 Frame = +1

Query: 316  LICMTCFTALVAAGCIACGPIVLDT-YWPIKKSKEKKNSSPVCKSPCCP 459
            L C  C T      CIA G ++LD  +W   + K + +   + K  CCP
Sbjct: 1142 LQCSECQTKFPV--CIASGRLILDNIFWLCPRCKHRAHQHEIPKYNCCP 1188


>AF022967-12|AAB69873.2|  467|Caenorhabditis elegans Hypothetical
           protein C13A2.1 protein.
          Length = 467

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  LSEDFQNYVTAFHEFRDYGSLVN 108
           +SE +QN++ A H ++ YG+ VN
Sbjct: 172 VSEQWQNFLFAVHIYKKYGAFVN 194


>AF016419-3|AAG24048.1|  529|Caenorhabditis elegans Hypothetical
           protein F07G11.3 protein.
          Length = 529

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  LSEDFQNYVTAFHEFRDYGSLVN 108
           +SE +QN++ A H ++ YG+ VN
Sbjct: 177 VSEQWQNFLFAVHIYKKYGAFVN 199


>AF016419-1|AAG24051.1|  499|Caenorhabditis elegans Hypothetical
           protein F07G11.4 protein.
          Length = 499

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 10/23 (43%), Positives = 17/23 (73%)
 Frame = +1

Query: 40  LSEDFQNYVTAFHEFRDYGSLVN 108
           +SE +QN++ A H ++ YG+ VN
Sbjct: 160 VSEQWQNFLFAVHIYKKYGAFVN 182


>U41007-17|AAA82261.1|  507|Caenorhabditis elegans Hypothetical
           protein C33H5.2 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 3/43 (6%)
 Frame = +1

Query: 40  LSEDFQNYVTAFHEFRDYGSLVNCID*SGI---FLIFVSYQSE 159
           +SE +QN++ A H ++ YG  +N    S I   F +   Y+ E
Sbjct: 166 VSEQWQNFLFAVHIYKKYGGFMNLYLISTINTFFAVMKEYEKE 208


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,266,246
Number of Sequences: 27780
Number of extensions: 245228
Number of successful extensions: 662
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 662
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1194789454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)