Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d06
         (673 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.08c |nup211||nuclear pore complex associated protein|Sch...    30   0.35 
SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    28   1.1  
SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual       28   1.1  
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po...    28   1.4  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    27   1.9  
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb...    27   3.3  
SPBC21H7.07c |his5||imidazoleglycerol phosphate dehydratase|Schi...    27   3.3  
SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces p...    26   5.7  

>SPCC162.08c |nup211||nuclear pore complex associated
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1837

 Score = 29.9 bits (64), Expect = 0.35
 Identities = 17/73 (23%), Positives = 33/73 (45%), Gaps = 2/73 (2%)
 Frame = +3

Query: 342 EEITSRYRHRVEREDTYVEVILNQYENFEHYLKQNNAIEMYEMFYKKMPPTQLIEKSALR 521
           E +   Y H +E  +    ++  Q++ F H   Q   + M E + K +   Q  +    +
Sbjct: 427 ERLQRSYNHVMEEANLQHPLVKEQFKRFAH--MQREIVAMSEQYQKSLEDCQKAKSRYEQ 484

Query: 522 INSLLKD--TDNR 554
           + +L KD  T+N+
Sbjct: 485 LETLFKDKCTENK 497


>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 225 VQTIISKSENEVNTHRITSQEQGVNHVEGGWPKEINFLDEE 347
           V  ++   E+E  TH IT  +         +PK IN+LD E
Sbjct: 103 VHRVVKLYESENQTHLITKGDNNKIDDVAMFPKSINYLDRE 143


>SPCC162.07 |ent1||epsin|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 706

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 22/94 (23%), Positives = 37/94 (39%)
 Frame = +3

Query: 222 EVQTIISKSENEVNTHRITSQEQGVNHVEGGWPKEINFLDEEITSRYRHRVEREDTYVEV 401
           E+Q +I +S+ +        +    N  E    K I    EE  +R RH+ ERE      
Sbjct: 234 ELQRVIEESKRQAEED--AKRRNMANDSEAELQKAIQLSKEEDEARQRHQREREQQEQAF 291

Query: 402 ILNQYENFEHYLKQNNAIEMYEMFYKKMPPTQLI 503
           + NQ   ++      N ++     + +  PT  I
Sbjct: 292 MGNQQNAYQPVDFFGNPVQPQPTGFLQQQPTGFI 325


>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 401

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 23/67 (34%), Positives = 35/67 (52%)
 Frame = +3

Query: 282 QEQGVNHVEGGWPKEINFLDEEITSRYRHRVEREDTYVEVILNQYENFEHYLKQNNAIEM 461
           QEQ V  V+ G     N+L E I+  YR     E+TY   I+N+ +    Y+ QN   +M
Sbjct: 179 QEQAVKRVDVGGKLLTNYLKEVIS--YRKYNMMEETY---IVNEIKESVCYVSQNFKEDM 233

Query: 462 YEMFYKK 482
            E+ ++K
Sbjct: 234 -EICHEK 239


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
           subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 21/59 (35%), Positives = 28/59 (47%), Gaps = 1/59 (1%)
 Frame = -2

Query: 639 DHELDIFYYSTPQLFWDYLHKTIQYMLLGDYLCLLRDY*FAKPIFLL-VEWAAFFCKTF 466
           DH   I Y    QLFW Y  K +Q ++  D   LL    F +   L  VEW + F K++
Sbjct: 268 DHSQIIGYDDINQLFWSY--KGLQEIMCADKTPLLDLPPFMRYRHLSDVEWKSCFYKSY 324


>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 494

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
 Frame = +3

Query: 63  LGNKMDLS-RPYVNFRKQFGKQPRFCE 140
           L N+ DLS  P +NF +++ + PRF E
Sbjct: 412 LSNRDDLSLTPLINFLRKYIRDPRFSE 438


>SPBC21H7.07c |his5||imidazoleglycerol phosphate
           dehydratase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 216

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 12/43 (27%), Positives = 25/43 (58%)
 Frame = +3

Query: 318 PKEINFLDEEITSRYRHRVEREDTYVEVILNQYENFEHYLKQN 446
           P+E NF+DE ITS++ ++   +   V+  +   ++  H L ++
Sbjct: 27  PEESNFIDELITSKHANQKGEQVIQVDTGIGFLDHMYHALAKH 69


>SPCC1235.08c |pdh1||DUF1751 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 226

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +1

Query: 31  LFLRLHLYFLFWEIKWIY 84
           LFL +HL+++F    W Y
Sbjct: 173 LFLSIHLFYVFQSFPWTY 190


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,732
Number of Sequences: 5004
Number of extensions: 57855
Number of successful extensions: 174
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 174
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)