Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d06
         (673 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0746 - 31636024-31641396                                         31   0.84 
11_01_0442 - 3369827-3370168,3370608-3372616,3372953-3373277,337...    30   1.5  
02_05_0737 - 31328473-31330513,31331015-31331184                       28   7.8  
02_04_0614 - 24400284-24400568,24400669-24400932,24401040-244011...    28   7.8  

>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 378  REDTYVEVILNQYENFEHYLKQNNAIEMYEMFYKKMPPTQL 500
            R D    + +NQ   FE  LK  N +E Y+ ++    PT L
Sbjct: 1176 RGDAVQTIDMNQDNYFEEALKMRNLLEQYDYYHGSQKPTLL 1216


>11_01_0442 -
           3369827-3370168,3370608-3372616,3372953-3373277,
           3373386-3373415
          Length = 901

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
 Frame = +3

Query: 168 APNKGEQRKYCLRNTVNQEVQTIISKSENEVNTHRITSQEQGVNHVEGGWPKEI-NFLDE 344
           +PN  +  K C R T N+   T  +KS NE       S +    H +   P    N  DE
Sbjct: 20  SPNHSQSPKICSRITDNETQGTATAKSLNEKLVLETVSDDSSTQHCQSPQPDVFTNVKDE 79

Query: 345 EITSRYRHRVER 380
           ++    +   E+
Sbjct: 80  DMQDSVKSLSEK 91


>02_05_0737 - 31328473-31330513,31331015-31331184
          Length = 736

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/58 (32%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
 Frame = +3

Query: 309 GGWPKEINFLDEEITSRYRHRVEREDTYVEVILNQYENFEHYLKQNNAIEM-YEMFYK 479
           GG PK+ NF  E     ++HRVE +  Y E      E+  H +  +NA  + +E  Y+
Sbjct: 4   GGPPKKRNFKIE----LFKHRVELDPKYAERTWKVLEHAIHEIYNHNASGLSFEELYR 57


>02_04_0614 -
           24400284-24400568,24400669-24400932,24401040-24401134,
           24401173-24401253,24401544-24402066
          Length = 415

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 6/56 (10%)
 Frame = +3

Query: 315 WPKEINFLDEEIT-----SRYRHRVERE-DTYVEVILNQYENFEHYLKQNNAIEMY 464
           W KEI+ L  EI      SR RH  ERE D YV  ++ +      +L+ +   ++Y
Sbjct: 28  WDKEIDLLQREIEEQDELSRLRHEQEREDDLYVCRMIEERHGEPCHLEDHELEKIY 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,028,053
Number of Sequences: 37544
Number of extensions: 305619
Number of successful extensions: 725
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 725
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)