Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d06
         (673 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U46675-5|AAL32215.1|  281|Caenorhabditis elegans Endophilin-rela...    32   0.43 
U46675-4|AAB52640.1|  366|Caenorhabditis elegans Endophilin-rela...    32   0.43 
AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical...    29   2.3  
Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical pr...    28   5.3  
Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical pr...    28   5.3  
AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical ...    28   5.3  
AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protei...    28   5.3  
AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.      28   5.3  
Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical pr...    28   6.9  
Z93385-1|CAB07638.1|  312|Caenorhabditis elegans Hypothetical pr...    27   9.2  
U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediat...    27   9.2  
U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated p...    27   9.2  
U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin pr...    27   9.2  
U21733-1|AAB38384.1|  869|Caenorhabditis elegans UNC-44 protein.       27   9.2  
AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans receptor-medi...    27   9.2  

>U46675-5|AAL32215.1|  281|Caenorhabditis elegans Endophilin-related
           protein protein1, isoform b protein.
          Length = 281

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +3

Query: 345 EITSRYRHRVEREDTYVEVILNQYENFEHYLKQNNAIEMYEMFYKKMPPTQLIEKSALRI 524
           E+ S + + ++R D   +         E YL+ N  + M E+FY+K+   +L +  A+R 
Sbjct: 34  ELDSHFENLLQRADKTEDHTRRLLSAIEGYLQPNPTVRMEEVFYEKL---ELKKDGAIRQ 90

Query: 525 NSL 533
           N+L
Sbjct: 91  NNL 93


>U46675-4|AAB52640.1|  366|Caenorhabditis elegans Endophilin-related
           protein protein1, isoform a protein.
          Length = 366

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 18/63 (28%), Positives = 33/63 (52%)
 Frame = +3

Query: 345 EITSRYRHRVEREDTYVEVILNQYENFEHYLKQNNAIEMYEMFYKKMPPTQLIEKSALRI 524
           E+ S + + ++R D   +         E YL+ N  + M E+FY+K+   +L +  A+R 
Sbjct: 34  ELDSHFENLLQRADKTEDHTRRLLSAIEGYLQPNPTVRMEEVFYEKL---ELKKDGAIRQ 90

Query: 525 NSL 533
           N+L
Sbjct: 91  NNL 93


>AL032627-14|CAA21549.1|  386|Caenorhabditis elegans Hypothetical
           protein Y41C4A.11 protein.
          Length = 386

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = -3

Query: 170 SDRIYEMNWHFAKPWLLSKL-LSKIHIW 90
           SDR+  +++H  KPW+L+ L    + IW
Sbjct: 107 SDRVKSVDFHSEKPWILTALHTGNVQIW 134


>Z82093-9|CAD27620.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 318  PKEINFLDEEITSRYRHRVEREDTYV-EVILNQYENFEHYLKQNNAIEMYEM 470
            PK    +D++ T R  H ++RED  V  +I+  Y+N  +  +Q  A+ + ++
Sbjct: 1814 PKRQFTIDQDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDV 1865


>Z82064-3|CAD27611.1| 2920|Caenorhabditis elegans Hypothetical protein
            W02B9.1b protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 318  PKEINFLDEEITSRYRHRVEREDTYV-EVILNQYENFEHYLKQNNAIEMYEM 470
            PK    +D++ T R  H ++RED  V  +I+  Y+N  +  +Q  A+ + ++
Sbjct: 1814 PKRQFTIDQDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDV 1865


>Z82064-1|CAB61036.1| 1223|Caenorhabditis elegans Hypothetical
           protein W02B9.1a protein.
          Length = 1223

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 318 PKEINFLDEEITSRYRHRVEREDTYV-EVILNQYENFEHYLKQNNAIEMYEM 470
           PK    +D++ T R  H ++RED  V  +I+  Y+N  +  +Q  A+ + ++
Sbjct: 117 PKRQFTIDQDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDV 168


>AL032638-2|CAD27619.1| 2920|Caenorhabditis elegans Hypothetical
            protein W02B9.1b protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 318  PKEINFLDEEITSRYRHRVEREDTYV-EVILNQYENFEHYLKQNNAIEMYEM 470
            PK    +D++ T R  H ++RED  V  +I+  Y+N  +  +Q  A+ + ++
Sbjct: 1814 PKRQFTIDQDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDV 1865


>AJ307058-1|CAC38842.1| 2920|Caenorhabditis elegans HMR-1B protein
            protein.
          Length = 2920

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 318  PKEINFLDEEITSRYRHRVEREDTYV-EVILNQYENFEHYLKQNNAIEMYEM 470
            PK    +D++ T R  H ++RED  V  +I+  Y+N  +  +Q  A+ + ++
Sbjct: 1814 PKRQFTIDQDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDV 1865


>AF016854-1|AAB94553.1| 1223|Caenorhabditis elegans HMR-1 protein.
          Length = 1223

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 15/52 (28%), Positives = 29/52 (55%), Gaps = 1/52 (1%)
 Frame = +3

Query: 318 PKEINFLDEEITSRYRHRVEREDTYV-EVILNQYENFEHYLKQNNAIEMYEM 470
           PK    +D++ T R  H ++RED  V  +I+  Y+N  +  +Q  A+ + ++
Sbjct: 117 PKRQFTIDQDGTLRVAHTLDREDIAVYNLIIEAYDNSNNIGRQMVAVYLQDV 168


>Z68342-4|CAA92776.1| 1000|Caenorhabditis elegans Hypothetical
           protein F38E11.5 protein.
          Length = 1000

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 173 RSDRIYEMNWHFAKPWLLSKLLS-KIHIW 90
           RSDR+  ++ H  + WLL+ L +  +HIW
Sbjct: 14  RSDRVKCVDLHPVETWLLAALYNGNVHIW 42


>Z93385-1|CAB07638.1|  312|Caenorhabditis elegans Hypothetical
           protein M01E5.1 protein.
          Length = 312

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -1

Query: 142 TSQNLGCFPNCFRKFTYGRDRSILFPRKENKDVTLEK 32
           +S+NL C P  F  F +GR+   L   K +  + ++K
Sbjct: 87  SSKNLLCCPKPFSDFLFGRESGALMEDKYSLPIGMQK 123


>U64604-2|AAF98624.2| 1093|Caenorhabditis elegans Receptor mediated
           endocytosis protein6, isoform a protein.
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 191 SLLTFIRSDRIYEMNWHFAKPWLLSKLLSKI 99
           +LLTF+R   +  ++W+FA   ++S+ ++ I
Sbjct: 904 NLLTFLRDRLMQNVDWNFATDTMMSRAMTTI 934


>U50071-2|AAA93447.2| 6994|Caenorhabditis elegans Uncoordinated
            protein 44, isoform f protein.
          Length = 6994

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 216  NQEVQTIISKSENEVNTHR-ITSQEQGVNHVEGGWPKEINFLDEEITSRYRHRVEREDTY 392
            +QE  T ++  ++   + +  TSQ+          P  ++  D E+T+R   +  +E + 
Sbjct: 6287 DQEYDTCVTSQDDTYESAQGWTSQDSEYTTATSQAPSRLSDSDAELTARDHDQERQETST 6346

Query: 393  VEVILNQYENFEHYLKQNN 449
             + IL+  ++  H+  Q +
Sbjct: 6347 PQAILSPVDSDRHFTVQQD 6365


>U39847-1|AAB41827.1| 6994|Caenorhabditis elegans AO13 ankyrin
            protein.
          Length = 6994

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 216  NQEVQTIISKSENEVNTHR-ITSQEQGVNHVEGGWPKEINFLDEEITSRYRHRVEREDTY 392
            +QE  T ++  ++   + +  TSQ+          P  ++  D E+T+R   +  +E + 
Sbjct: 6287 DQEYDTCVTSQDDTYESAQGWTSQDSEYTTATSQAPSRLSDSDAELTARDHDQERQETST 6346

Query: 393  VEVILNQYENFEHYLKQNN 449
             + IL+  ++  H+  Q +
Sbjct: 6347 PQAILSPVDSDRHFTVQQD 6365


>U21733-1|AAB38384.1|  869|Caenorhabditis elegans UNC-44 protein.
          Length = 869

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/79 (20%), Positives = 37/79 (46%), Gaps = 1/79 (1%)
 Frame = +3

Query: 216 NQEVQTIISKSENEVNTHR-ITSQEQGVNHVEGGWPKEINFLDEEITSRYRHRVEREDTY 392
           +QE  T ++  ++   + +  TSQ+          P  ++  D E+T+R   +  +E + 
Sbjct: 162 DQEYDTCVTSQDDTYESAQGWTSQDSEYTTATSQAPSRLSDSDAELTARDHDQERQETST 221

Query: 393 VEVILNQYENFEHYLKQNN 449
            + IL+  ++  H+  Q +
Sbjct: 222 PQAILSPVDSDRHFTVQQD 240


>AY750054-1|AAW73253.1| 1093|Caenorhabditis elegans
           receptor-mediated endocytosis 6 protein.
          Length = 1093

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 10/31 (32%), Positives = 21/31 (67%)
 Frame = -3

Query: 191 SLLTFIRSDRIYEMNWHFAKPWLLSKLLSKI 99
           +LLTF+R   +  ++W+FA   ++S+ ++ I
Sbjct: 904 NLLTFLRDRLMQNVDWNFATDTMMSRAMTTI 934


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,880,556
Number of Sequences: 27780
Number of extensions: 311968
Number of successful extensions: 862
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 837
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 862
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)