Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26d03
         (733 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical pr...    30   1.9  
U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila disc...    28   7.8  
AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein...    28   7.8  
AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like pr...    28   7.8  
AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD contain...    28   7.8  
AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein...    28   7.8  

>Z75529-2|CAA99783.1|  755|Caenorhabditis elegans Hypothetical
           protein C44H9.2 protein.
          Length = 755

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = -3

Query: 575 LKWNRRGLEANWNL-QESSRLGERVADLVKHYYV*W 471
           +K+ R   E NWNL  +SSR    +  L+KHY+V W
Sbjct: 558 IKFLRYVSEPNWNLLPDSSRTVIDMPVLMKHYFVGW 593


>U39742-7|AAK39197.2|  967|Caenorhabditis elegans Drosophila discs
            large homologprotein 1, isoform a protein.
          Length = 967

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 1    DSFTKTSKKAHDANKLLSKITSDVIMSDRDGNNWVP 108
            D FT+     H AN +LSK+ S +I  +     WVP
Sbjct: 931  DLFTQEISNVHSANDVLSKVYS-IISRESQTPIWVP 965


>AJ295228-1|CAC35153.1|  967|Caenorhabditis elegans MAGUK protein
            DLG-1 protein.
          Length = 967

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 1    DSFTKTSKKAHDANKLLSKITSDVIMSDRDGNNWVP 108
            D FT+     H AN +LSK+ S +I  +     WVP
Sbjct: 931  DLFTQEISNVHSANDVLSKVYS-IISRESQTPIWVP 965


>AF406786-1|AAL01376.1|  967|Caenorhabditis elegans SAP97-like protein
            DLG-1 protein.
          Length = 967

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/36 (38%), Positives = 19/36 (52%)
 Frame = +1

Query: 1    DSFTKTSKKAHDANKLLSKITSDVIMSDRDGNNWVP 108
            D FT+     H AN +LSK+ S +I  +     WVP
Sbjct: 931  DLFTQEISNVHSANDVLSKVYS-IISRESQTPIWVP 965


>AF192264-1|AAF18435.1|  321|Caenorhabditis elegans CHORD containing
           protein protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 608 FGSWMFGKGCHRTQNLTKKPQNELK 682
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


>AC006708-3|AAF60417.1|  321|Caenorhabditis elegans Chord protein
           protein 1 protein.
          Length = 321

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 608 FGSWMFGKGCHRTQNLTKKPQNELK 682
           FG+WM  KGC R ++  +KP + +K
Sbjct: 54  FGTWMNYKGCTRGKHSNEKPVDIVK 78


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,057,023
Number of Sequences: 27780
Number of extensions: 333040
Number of successful extensions: 848
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 806
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 848
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1714401074
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)