Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26c23
         (677 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.5  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   4.4  

>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 328

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 24/64 (37%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +3

Query: 165 HLNPLVRRGVAYMHLTPSKLRGGWIMSDLAISDPRSMVGRTLAPLYQDKNIISLVYNDQ- 341
           H  PLV RGVA M +    L+        A+SD +S     L  L  DK +ISL    Q 
Sbjct: 165 HKRPLVTRGVA-MSIDDKALK--------ALSDLKSSTENNLVILSIDKEVISLSQEKQN 215

Query: 342 -PPA 350
            PP+
Sbjct: 216 IPPS 219


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 608 PRHRMHQPKRRELVPQYHSFC 546
           P H    P+  EL  QYHSFC
Sbjct: 748 PFHANAPPEPHELKLQYHSFC 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,744,063
Number of Sequences: 5004
Number of extensions: 56292
Number of successful extensions: 141
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)