Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26c23
         (677 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    22   4.7  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          22   6.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   8.2  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   8.2  

>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 22.2 bits (45), Expect = 4.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = +3

Query: 570 KFTSLWLVHSVPRFPPIPDLIHGLNVSGYDYP 665
           +F +  +V  VP     PD++H ++ + Y YP
Sbjct: 19  RFNNQTVVDKVP-----PDMLHLIDANWYQYP 45


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 352 LSTNPIYYNLSPICIQKAKE 411
           + T PIYYNL+ + +   K+
Sbjct: 206 VETEPIYYNLTMVKLNWPKK 225


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 116 PFLISALRGETQGIIYKKCKQKQ 48
           PFL   + G+ + ++Y   K+K+
Sbjct: 23  PFLKRLITGDEKWVVYNNIKRKR 45


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -1

Query: 116 PFLISALRGETQGIIYKKCKQKQ 48
           PFL   + G+ + ++Y   K+K+
Sbjct: 144 PFLKRLITGDEKWVVYNNIKRKR 166


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 190,323
Number of Sequences: 438
Number of extensions: 4000
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20586735
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)