Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26c12
(777 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|c... 130 3e-31
SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1 |Schi... 28 1.7
SPBC337.15c |coq7||ubiquinone biosynthesis protein Coq7|Schizosa... 27 2.3
SPAC328.04 |||AAA family ATPase, unknown biological role|Schizos... 27 4.0
SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit T... 27 4.0
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 26 5.2
SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit |Schizosacc... 25 9.2
SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces ... 25 9.2
>SPAC688.03c |||human AMMECR1 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 204
Score = 130 bits (313), Expect = 3e-31
Identities = 71/187 (37%), Positives = 108/187 (57%), Gaps = 5/187 (2%)
Frame = +1
Query: 52 DMCYFCFDVLYCQLH--SMEPPQTPKFTNEAYPLFVTWKIGKEH--RLRGCIGTFNAMHL 219
+ CY+CF+V+ L + K + PLFV + GK H +LRGCIGTF A L
Sbjct: 16 EYCYYCFEVVAATLEHRKVRDKWNAKSWTRSIPLFVKFASGKGHDKQLRGCIGTFRARPL 75
Query: 220 HSGLREYAITSALRDSRF-PITREEVPRLSVSVSILQHFEEAEHYLDWKLGKHGIRIEFV 396
+ L ++ +A D RF PI+ E+ L + +L FE + LDW++G HG+ I+F
Sbjct: 76 VTNLTYFSKQAAFCDERFRPISLGELALLECQIDLLVDFEPIDDPLDWEVGIHGVSIKFT 135
Query: 397 SERGSKRTATYLPQVATEQGWDQIQTIDSLLRKGGYKAAITADLRRSIKLTRYQSEEVSA 576
+ G + ++TYLP VA EQ WDQ +T++SL+ K GY +I + I TRY+S E+
Sbjct: 136 AN-GIRYSSTYLPSVAAEQRWDQEETLESLIHKAGYYGSIRS---LQITATRYKSLEIGC 191
Query: 577 SYTDYVN 597
+Y +Y++
Sbjct: 192 TYEEYLH 198
>SPBC16A3.09c |ufd1||Cdc48-Ufd1-Npl4 complex component Ufd1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 342
Score = 27.9 bits (59), Expect = 1.7
Identities = 19/77 (24%), Positives = 37/77 (48%)
Frame = +1
Query: 274 PITREEVPRLSVSVSILQHFEEAEHYLDWKLGKHGIRIEFVSERGSKRTATYLPQVATEQ 453
P E++ RL+VS +L FE + HG +EF++E G ++ + +
Sbjct: 62 PSALEKLSRLNVSYPMLFDFENEAA----EKKTHGGVLEFIAEEGRVYLPYWMMTTLSLE 117
Query: 454 GWDQIQTIDSLLRKGGY 504
D ++ I++ + +G Y
Sbjct: 118 PGDLVRVINTDIAQGSY 134
>SPBC337.15c |coq7||ubiquinone biosynthesis protein
Coq7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 216
Score = 27.5 bits (58), Expect = 2.3
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = +3
Query: 81 ILPVTQYGTTADAQIHKRGLSFICDLEDRERAPSKGMHWDLQRYAL 218
++ V Q G QI+K G FI D + AP+ WD ++Y L
Sbjct: 46 VIRVDQAGELGANQIYK-GQHFILQFTDPKVAPTIQHMWDQEKYHL 90
>SPAC328.04 |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Frame = -3
Query: 175 ALSRSSKS-QIKDRPRL*IWASAVVPYCVTGSIKHQNKNNTY 53
+L+R++ S Q D PR+ + A+ +P+C+ + + + TY
Sbjct: 590 SLARAAASRQTADHPRVLVLAATNLPWCIDDAARRRFVRRTY 631
>SPAC16E8.11c |tfb1||transcription factor TFIIH complex subunit
Tfb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 477
Score = 26.6 bits (56), Expect = 4.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = -3
Query: 103 PYCVTGSIKHQNKNNTYRVSLQNRGNHSKVDQH 5
PY V +IK + +N +VSL + H +QH
Sbjct: 122 PYNVLSTIKPKTVDNQMKVSLTGQQIHDMFEQH 154
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 26.2 bits (55), Expect = 5.2
Identities = 17/62 (27%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Frame = +1
Query: 28 YHDSVAILDMCYFCFDVLYCQLHSMEPPQT--PKFTNEAYPLFVTWKIGKEHRLRGCIGT 201
YH +A + C C+ LY Q + Q+ F + +YP F+ L+ IG
Sbjct: 456 YHSEIAQMLCCSLCYLCLYAQNLNSHSSQSLFELFQSASYPGFLISNDVNHKILKYVIGA 515
Query: 202 FN 207
N
Sbjct: 516 IN 517
>SPBC146.14c |sec26|SPBC337.01c|coatomer beta subunit
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 940
Score = 25.4 bits (53), Expect = 9.2
Identities = 18/53 (33%), Positives = 23/53 (43%)
Frame = +3
Query: 462 PNTNNRFFTKEGRLQSCNNSRFATQHQTNSISV*GGFRLIH*LCEPALLTPAI 620
P NN K+ + +CN+ R QH I R + L EP LL P I
Sbjct: 80 PKYNNDGTMKQEMILACNSFRNDLQHPNEFIRG-ATLRFLCKLKEPELLDPLI 131
>SPCC330.12c |sdh3||succinate dehydrogenase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 180
Score = 25.4 bits (53), Expect = 9.2
Identities = 17/54 (31%), Positives = 27/54 (50%), Gaps = 5/54 (9%)
Frame = +1
Query: 109 PQTPKFTNEAYPLFVTWKIGKEHRLRGCI--GTFNAM---HLHSGLREYAITSA 255
P +P T Y +TW + HR+ GC+ GT A +L + L Y++ +A
Sbjct: 59 PNSPHLT--IYEPQLTWYLSSLHRITGCVVAGTLYAFAMGYLVAPLAGYSLDTA 110
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,113,921
Number of Sequences: 5004
Number of extensions: 62246
Number of successful extensions: 168
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 156
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 165
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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