Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26c11
(754 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like |Schizosacch... 162 4e-41
SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex su... 161 7e-41
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa... 126 3e-30
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c... 50 4e-07
SPBC13G1.10c |mug81||ATP-dependent RNA helicase Slh1|Schizosacch... 38 0.002
SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2 |Schizosacch... 37 0.003
SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomy... 33 0.058
SPCC1450.11c |cek1||serine/threonine protein kinase Cek1|Schizos... 33 0.058
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 31 0.23
SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme Fub2|Schiz... 30 0.41
SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr... 29 0.54
SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr... 27 2.2
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 27 2.9
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 27 2.9
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 3.8
SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces ... 27 3.8
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra... 27 3.8
SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit Swi2|Schizo... 26 6.6
SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase Ubp22|Sch... 26 6.6
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 26 6.6
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 25 8.8
SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyc... 25 8.8
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 25 8.8
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 25 8.8
SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pm... 25 8.8
>SPAC17H9.02 |||ATP-dependent RNA helicase Mtr4-like
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1030
Score = 162 bits (394), Expect = 4e-41
Identities = 79/119 (66%), Positives = 95/119 (79%), Gaps = 3/119 (2%)
Frame = +1
Query: 406 HEVAIPPNQEYAPL---LPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKT 576
H+V +P + +Y PL +P + P K Y F LDPFQ AI C++ ++SVLVSAHTSAGKT
Sbjct: 96 HKVVVPDDYDYIPLNKHIP-SDPPAKTYPFELDPFQSTAIKCVERMESVLVSAHTSAGKT 154
Query: 577 VVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVPINPSASCLIM 753
V+AEYAIA +LKN+QRVIYT+PIK+LSNQKYRE EF DVGL+TGDV INPSASCLIM
Sbjct: 155 VIAEYAIAQALKNRQRVIYTSPIKSLSNQKYRELLSEFGDVGLMTGDVSINPSASCLIM 213
>SPAC6F12.16c |mtr4||ATP-dependent RNA helicase, TRAMP complex
subunit Mtr4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1117
Score = 161 bits (392), Expect = 7e-41
Identities = 78/126 (61%), Positives = 95/126 (75%), Gaps = 2/126 (1%)
Frame = +1
Query: 382 LETHEGCTHEVAIPPNQEYAPLLPLTTE--PVKQYSFILDPFQKEAILCIDNLQSVLVSA 555
+E H+V+IPPN +Y P+ + P + Y F LDPFQ +I CI+ +SVLVSA
Sbjct: 161 VELRHQVRHQVSIPPNYDYVPISKHKSPIPPARTYPFTLDPFQAVSIACIERQESVLVSA 220
Query: 556 HTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVPINPS 735
HTSAGKTVVAEYA+A SL++KQRVIYT+PIKALSNQKYRE EF DVGL+TGDV INP
Sbjct: 221 HTSAGKTVVAEYAVAQSLRDKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDVTINPD 280
Query: 736 ASCLIM 753
A+CL+M
Sbjct: 281 ATCLVM 286
>SPCC550.03c |||RNA helicase involved in mRNA
catabolism|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1213
Score = 126 bits (305), Expect = 3e-30
Identities = 63/125 (50%), Positives = 82/125 (65%)
Frame = +1
Query: 379 TLETHEGCTHEVAIPPNQEYAPLLPLTTEPVKQYSFILDPFQKEAILCIDNLQSVLVSAH 558
TL H+ + + + L E + F LD FQKEAI ++ SV V+AH
Sbjct: 244 TLNLHKQPDYAHVVDSSAPIENFQQLVPEMALDFPFELDNFQKEAIYHLEMGDSVFVAAH 303
Query: 559 TSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVPINPSA 738
TSAGKTVVAEYAIAL+ K+ + IYT+PIKALSNQK+R+F +F DVG++TGDV +NP
Sbjct: 304 TSAGKTVVAEYAIALAQKHMTKAIYTSPIKALSNQKFRDFKHKFEDVGILTGDVQVNPEG 363
Query: 739 SCLIM 753
SCL+M
Sbjct: 364 SCLLM 368
>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1717
Score = 50.0 bits (114), Expect = 4e-07
Identities = 35/107 (32%), Positives = 55/107 (51%), Gaps = 11/107 (10%)
Frame = +1
Query: 466 PVKQYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQR--VIYTT 639
P + +F D +Q+E + +D +SV V A TS+GKT ++ YA+ L++ VIY
Sbjct: 728 PDSRVAFDPDEWQRETLDILDRDESVFVVAPTSSGKTFISFYAMEKVLRDNDDGVVIYVA 787
Query: 640 PIKALSNQ----KYREFSEEFHDVG-----LITGDVPINPSASCLIM 753
P KAL NQ Y F++ + G + T D IN +C ++
Sbjct: 788 PTKALVNQLSAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVL 834
>SPBC13G1.10c |mug81||ATP-dependent RNA helicase
Slh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1935
Score = 37.5 bits (83), Expect = 0.002
Identities = 18/49 (36%), Positives = 31/49 (63%), Gaps = 2/49 (4%)
Frame = +1
Query: 538 SVLVSAHTSAGKTVVAEYAIALSLKN--KQRVIYTTPIKALSNQKYREF 678
++ V A T +GKT+ AE A +L N K +V+Y P+KAL ++ +++
Sbjct: 1152 NIFVGAPTGSGKTMAAELATWRALHNYPKSKVVYIAPMKALVKERVKDW 1200
>SPAC9.03c |brr2|spp41|U5 snRNP complex subunit Brr2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2176
Score = 37.1 bits (82), Expect = 0.003
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 2/57 (3%)
Frame = +1
Query: 538 SVLVSAHTSAGKTVVAEYAIA--LSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVG 702
SV + A +GKTV AE A+ S ++ +Y PI+ + +++Y E+ +F D+G
Sbjct: 1382 SVFIGAPNGSGKTVCAELALLHHWSQEDYGTAVYIAPIQEIVDRRYEEWYGKFSDLG 1438
Score = 27.5 bits (58), Expect = 2.2
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Frame = +1
Query: 535 QSVLVSAHTSAGKTVVAEYAIALSLKNKQR-----------VIYTTPIKALSNQKYREFS 681
+++L+ A T AGKT VA I L+ R ++Y P+KAL + FS
Sbjct: 536 ENILLCAPTGAGKTNVAMLCILNELQKHLREDLSFNLQNFKIVYIAPLKALVQEMVNNFS 595
Query: 682 E 684
+
Sbjct: 596 K 596
>SPAC823.08c |||ATP-dependent RNA helicase Rrp3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 465
Score = 32.7 bits (71), Expect = 0.058
Identities = 31/138 (22%), Positives = 55/138 (39%), Gaps = 1/138 (0%)
Frame = +1
Query: 292 QKKPREEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVAIPPNQEYAPLLPLTTEPV 471
+KK E++++S L I S + E + G + P + ++ E
Sbjct: 5 EKKLTEDKKNSSLNKKIETSNSSSE---KSSENNNGDSQNNEAPKTFKELGVIDELCEAC 61
Query: 472 KQYSFILD-PFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIK 648
++ F P Q+EAI + N + V+ A T +GKT + L N + +
Sbjct: 62 EKLGFKTPTPIQQEAIPVVLNKRDVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLA 121
Query: 649 ALSNQKYREFSEEFHDVG 702
Y + SE+F +G
Sbjct: 122 PTRELAY-QISEQFEAIG 138
>SPCC1450.11c |cek1||serine/threonine protein kinase
Cek1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1338
Score = 32.7 bits (71), Expect = 0.058
Identities = 18/63 (28%), Positives = 29/63 (46%)
Frame = +1
Query: 238 LLEISVHMMTSSTLIPLYQKKPREEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVA 417
LLEI M S+L+P+Y+ +P + D TD N L + + + ++
Sbjct: 257 LLEIQEGMQKDSSLVPVYKNEPLIVDADDYFFTDENKQTLSLCSFLSQVMYYLEVAIDIT 316
Query: 418 IPP 426
IPP
Sbjct: 317 IPP 319
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 30.7 bits (66), Expect = 0.23
Identities = 18/43 (41%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 102 LQSYLFKMS-DINSLFDCFDETPITEAAIQLPNVKNVEKPNLE 227
L+S L+ + DINS+ D D+T +TE LPN ++ P LE
Sbjct: 1191 LESLLYGVDRDINSVMDALDKTYMTEVIQNLPN--GLDTPLLE 1231
>SPBC16H5.03c |fub2|uba2|SUMO E1-like activator enzyme
Fub2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 628
Score = 29.9 bits (64), Expect = 0.41
Identities = 16/49 (32%), Positives = 30/49 (61%), Gaps = 3/49 (6%)
Frame = +1
Query: 259 MMTSSTLIPLYQKKPREEEEDSELITD-INV--DLLQSRIVIHTLETHE 396
+++++T IPL Q+ P EDS+++TD IN D S ++ L+ ++
Sbjct: 542 ILSNATSIPLKQQPPSNSPEDSQVLTDEINEVNDFSSSERIVINLDEYD 590
>SPAC6C3.07 |mug68||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 515
Score = 29.5 bits (63), Expect = 0.54
Identities = 19/58 (32%), Positives = 32/58 (55%), Gaps = 3/58 (5%)
Frame = +3
Query: 90 NIENLQSYLFKMSDINSLF--DCFDETPITEAAIQLPNVKNVEKPNLE-ELTAAGNKR 254
N++ L S + +IN L + ++ PIT+ A + N+KN++ NLE + NKR
Sbjct: 285 NLDALNSCTMENHEINELTATNKMNDGPITKCARETINIKNLKTSNLERNQNSPKNKR 342
>SPBC2D10.14c |myo51||myosin type V|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1471
Score = 27.5 bits (58), Expect = 2.2
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
Frame = +1
Query: 535 QSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIK-ALSNQ 663
Q+++VS + AGKTV A+Y I L + Q V + +K ++ NQ
Sbjct: 153 QTIIVSGESGAGKTVAAKY-IMRYLTSVQGVDHNGVVKRSVENQ 195
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 27.1 bits (57), Expect = 2.9
Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 5/45 (11%)
Frame = +1
Query: 472 KQYSFILDPFQKEAIL-----CIDNLQSVLVSAHTSAGKTVVAEY 591
+Q +I+ PF ++ +L C + +L+ TS+GKT + EY
Sbjct: 869 EQEHYIITPFVQKNLLNIARACSTRMFPILIQGPTSSGKTSMIEY 913
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 27.1 bits (57), Expect = 2.9
Identities = 18/54 (33%), Positives = 28/54 (51%)
Frame = +1
Query: 334 TDINVDLLQSRIVIHTLETHEGCTHEVAIPPNQEYAPLLPLTTEPVKQYSFILD 495
T++NVDLL V E H+ H V+ Q+++ L T + ++S ILD
Sbjct: 341 TELNVDLLSLPSVKSLREEHKVLYHTVSQSVVQQFSKFL---TSDMHKFSTILD 391
>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 636
Score = 26.6 bits (56), Expect = 3.8
Identities = 10/22 (45%), Positives = 15/22 (68%)
Frame = +1
Query: 421 PPNQEYAPLLPLTTEPVKQYSF 486
PP +EY+P + L T PV + S+
Sbjct: 217 PPIEEYSPSVSLPTSPVAEESY 238
>SPAC16E8.07c |vph1||V-type ATPase subunit a|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 805
Score = 26.6 bits (56), Expect = 3.8
Identities = 15/45 (33%), Positives = 26/45 (57%), Gaps = 5/45 (11%)
Frame = -3
Query: 725 IGTSPV-IKPTS*NSSENSLYF*FERA----LIGVVYITLCLFFS 606
+GT P+ I PT ++ N L+ + ++GV+++T CLF S
Sbjct: 499 VGTYPIGIDPTWHSADNNLLFMNSYKMKLSIILGVIHMTFCLFLS 543
>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
transporting Cta4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1211
Score = 26.6 bits (56), Expect = 3.8
Identities = 11/34 (32%), Positives = 20/34 (58%)
Frame = +1
Query: 625 VIYTTPIKALSNQKYREFSEEFHDVGLITGDVPI 726
+I+T+P+K + Q + + H +ITGD P+
Sbjct: 680 LIFTSPLKEDARQTVQMLNNSSHRCMMITGDNPL 713
>SPAC1142.03c |swi2|SPAC17G6.20c|Swi5 complex subunit
Swi2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 722
Score = 25.8 bits (54), Expect = 6.6
Identities = 15/68 (22%), Positives = 29/68 (42%)
Frame = +1
Query: 295 KKPREEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVAIPPNQEYAPLLPLTTEPVK 474
KKPR+ + + I + + H ++ + GC+ E P++E LT++
Sbjct: 265 KKPRKVFDAVVIPVTIKPSIYTEPSLPHHIDWNNGCSEEFDFEPSREDEDFPDLTSDSTG 324
Query: 475 QYSFILDP 498
Q +P
Sbjct: 325 QDPLSSEP 332
>SPCC188.08c |ubp22|ubp5|ubiquitin C-terminal hydrolase
Ubp22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1108
Score = 25.8 bits (54), Expect = 6.6
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = +3
Query: 66 LINGMY*INIENLQSYLFKMSDINSLF 146
L++G+ NIE +++Y+ K DIN LF
Sbjct: 916 LVDGL--ANIELVEAYINKSGDINDLF 940
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 25.8 bits (54), Expect = 6.6
Identities = 6/17 (35%), Positives = 11/17 (64%)
Frame = -3
Query: 209 NIFNIWQLNRSFSYWCF 159
N++ W++NR WC+
Sbjct: 993 NVYTTWKMNRCSDNWCY 1009
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/55 (20%), Positives = 32/55 (58%)
Frame = +3
Query: 24 ERESEMYSKI*TDKLINGMY*INIENLQSYLFKMSDINSLFDCFDETPITEAAIQ 188
E++++ ++ + ++N ++++N + +S +++LF+CFD P+ + Q
Sbjct: 266 EQQTQKFANVLLQIILNSRKNLSLQNYVGFF--VSVLDALFECFD-VPVVQYMYQ 317
>SPAC105.01c |||potassium ion/proton antiporter|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 898
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/42 (28%), Positives = 21/42 (50%)
Frame = +1
Query: 601 LSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVPI 726
L ++KQ V + ALS K + E + G++ G +P+
Sbjct: 833 LGCRDKQAVSEKLEVAALSEMKKLGYIESSSEFGMLAGLIPL 874
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 25.4 bits (53), Expect = 8.8
Identities = 10/39 (25%), Positives = 24/39 (61%)
Frame = -1
Query: 607 VIELWHTQQPLFCQQTCELIQVQIVNYLYTILLLFETDP 491
+ E+ +QP++CQ C L ++ +L++ +L ++ +P
Sbjct: 172 IFEVDGQRQPIYCQNLCLLAKM----FLHSKMLYYDVEP 206
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 25.4 bits (53), Expect = 8.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +1
Query: 373 IHTLETHEGCTHEVAIPPNQEYAPLLPLTT 462
+HTLE HE +++ P++E P+L T+
Sbjct: 318 LHTLEGHEDIVTKISFSPHEE--PILASTS 345
>SPAPB2B4.04c ||pmc1, pmc1|P-type ATPase, calcium transporting Pmc1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1292
Score = 25.4 bits (53), Expect = 8.8
Identities = 18/67 (26%), Positives = 29/67 (43%)
Frame = +1
Query: 487 ILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQK 666
I+DP + + L + Q V+ G +V AIA Q IYT ++ +
Sbjct: 781 IMDPIRPDVPLAVKVCQGAGVTVRMVTGDNIVTAKAIA-----SQCGIYTEDGISMEGPE 835
Query: 667 YREFSEE 687
+R S+E
Sbjct: 836 FRSLSDE 842
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,893,035
Number of Sequences: 5004
Number of extensions: 60629
Number of successful extensions: 225
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 207
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 222
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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