Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26c11
(754 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0490 - 3782195-3782305,3782929-3783021,3783199-3783294,378... 144 5e-35
02_01_0451 - 3237849-3238061,3238142-3238268,3238418-3238656,323... 120 1e-27
12_01_1023 + 10458092-10458397,10459126-10459254,10459335-104595... 95 4e-20
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 92 4e-19
02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-41... 53 3e-07
03_05_1091 + 30322035-30322739,30322861-30324043,30324114-303251... 50 3e-06
09_01_0155 - 2301903-2302151,2302334-2302491,2302651-2302819,230... 37 0.015
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 34 0.14
08_02_1517 + 27642361-27643218 32 0.56
01_01_1165 - 9267891-9268145,9268395-9268510,9268991-9269127,926... 29 5.2
11_01_0805 - 7166265-7166759 28 9.2
02_04_0589 - 24117688-24119282,24119881-24119908,24120004-241200... 28 9.2
>11_01_0490 -
3782195-3782305,3782929-3783021,3783199-3783294,
3783373-3783521,3783886-3784039,3784110-3784205,
3784290-3784379,3784856-3785014,3785150-3785371,
3785552-3785668,3785753-3785824,3786768-3786836,
3786947-3787051,3787248-3787562,3787814-3788809
Length = 947
Score = 144 bits (350), Expect = 5e-35
Identities = 73/127 (57%), Positives = 94/127 (74%), Gaps = 9/127 (7%)
Frame = +1
Query: 400 CTHEVAIPPN----QEYAPLLPLTT-----EPVKQYSFILDPFQKEAILCIDNLQSVLVS 552
C HEVA+P ++ A L++ E K Y F LDPFQ +I C++ +SVLVS
Sbjct: 45 CIHEVAVPKGYAAAKDEAVHGTLSSPAFHGEMAKAYPFQLDPFQSVSIACLERNESVLVS 104
Query: 553 AHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVPINP 732
AHTSAGKT +AEYAIA+S ++KQRVIYT+P+KALSNQKYRE S+EF DVGL+TGDV + P
Sbjct: 105 AHTSAGKTAIAEYAIAMSFRDKQRVIYTSPLKALSNQKYRELSQEFSDVGLMTGDVTLQP 164
Query: 733 SASCLIM 753
+A+CL+M
Sbjct: 165 NATCLVM 171
>02_01_0451 -
3237849-3238061,3238142-3238268,3238418-3238656,
3238937-3239151,3239569-3240031,3240562-3240715,
3241724-3241833,3242540-3242797,3242843-3242854,
3243492-3243545,3244202-3244312,3244390-3244545,
3244798-3245201,3245405-3245501,3246041-3246050,
3246097-3246164,3246652-3246762,3246874-3247074,
3247384-3247485,3247980-3248087,3248209-3248411,
3248563-3248680,3248774-3248854,3248958-3249500,
3249602-3249730
Length = 1428
Score = 120 bits (289), Expect = 1e-27
Identities = 59/93 (63%), Positives = 71/93 (76%)
Frame = +1
Query: 475 QYSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKAL 654
+Y F LD FQKEAI + +SV V+AHTSAGKTVVAEYA AL+ K+ R +YT PIK +
Sbjct: 383 EYPFELDKFQKEAIYYLQKGESVFVAAHTSAGKTVVAEYAFALATKHCTRAVYTAPIKTI 442
Query: 655 SNQKYREFSEEFHDVGLITGDVPINPSASCLIM 753
SNQKYR+F +F DVGL+TGDV I P A+CLIM
Sbjct: 443 SNQKYRDFCGKF-DVGLLTGDVSIRPEATCLIM 474
>12_01_1023 +
10458092-10458397,10459126-10459254,10459335-10459553,
10459649-10459987,10460095-10460199,10460697-10460807,
10461438-10461688,10462023-10462146,10462440-10462716,
10463212-10463357,10463449-10463598,10463678-10463910,
10464246-10464375,10464406-10464510,10464636-10464914
Length = 967
Score = 95.5 bits (227), Expect = 4e-20
Identities = 61/129 (47%), Positives = 72/129 (55%), Gaps = 11/129 (8%)
Frame = +1
Query: 400 CTHEVAIPPNQEYAPLLPLT-----------TEPVKQYSFILDPFQKEAILCIDNLQSVL 546
C H+V+ P + Y P P T P K + F LDPFQ EAI C+DN +SV+
Sbjct: 45 CVHDVSYP--EGYDPSAPATHLLNGVGGAEGAGPAKTFPFQLDPFQAEAIRCLDNGESVM 102
Query: 547 VSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALSNQKYREFSEEFHDVGLITGDVPI 726
QRVIYT+PIKALSNQKYREF EEF DVGL+TGDV I
Sbjct: 103 ------------------------QRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTI 138
Query: 727 NPSASCLIM 753
P+ASCL+M
Sbjct: 139 EPNASCLVM 147
>02_05_0685 +
30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 92.3 bits (219), Expect = 4e-19
Identities = 48/94 (51%), Positives = 63/94 (67%), Gaps = 2/94 (2%)
Frame = +1
Query: 478 YSFILDPFQKEAILCIDNLQSVLVSAHTSAGKTVVAEYAIALSLKNKQRVIYTTPIKALS 657
Y F +D FQ+ AI SV+VSA TS+GKT++AE A ++ +R+ YTTP+KALS
Sbjct: 166 YDFPIDKFQRLAIQAFLRGSSVVVSAPTSSGKTLIAEAAAVATVARGRRLFYTTPLKALS 225
Query: 658 NQKYREFSEEF--HDVGLITGDVPINPSASCLIM 753
NQK+R+F F H+VGL+TGD IN A LIM
Sbjct: 226 NQKFRDFRNTFGDHNVGLLTGDSAINKDAQILIM 259
>02_01_0055 + 410661-411380,411481-413733,414486-414875,414983-418153
Length = 2177
Score = 52.8 bits (121), Expect = 3e-07
Identities = 28/73 (38%), Positives = 47/73 (64%), Gaps = 7/73 (9%)
Frame = +1
Query: 493 DPFQKEAILCIDNLQ-SVLVSAHTSAGKTVVAEYAI------ALSLKNKQRVIYTTPIKA 651
+P Q + + N SVLV+A T +GKT+ AE+AI A+S ++ RV+Y PI+A
Sbjct: 1363 NPIQTQVFTVLYNTDDSVLVAAPTGSGKTICAEFAILRNHQKAVSGESNMRVVYIAPIEA 1422
Query: 652 LSNQKYREFSEEF 690
L+ ++YR++ ++F
Sbjct: 1423 LAKERYRDWEQKF 1435
>03_05_1091 + 30322035-30322739,30322861-30324043,30324114-30325105,
30326409-30326798,30326896-30330060
Length = 2144
Score = 49.6 bits (113), Expect = 3e-06
Identities = 27/79 (34%), Positives = 47/79 (59%), Gaps = 7/79 (8%)
Frame = +1
Query: 493 DPFQKEAILCIDNLQ-SVLVSAHTSAGKTVVAEYAI------ALSLKNKQRVIYTTPIKA 651
+P Q + N SVLV+A T +GKT+ AE+AI A+S + RV+Y PI+A
Sbjct: 1332 NPIQTQVFTASYNSDDSVLVAAPTGSGKTICAEFAILRNHQKAVSGDSNMRVVYVAPIEA 1391
Query: 652 LSNQKYREFSEEFHDVGLI 708
L+ ++Y+++ +F ++ +
Sbjct: 1392 LAKERYKDWESKFGELARV 1410
>09_01_0155 -
2301903-2302151,2302334-2302491,2302651-2302819,
2303796-2304839,2305792-2306075,2306318-2307333,
2307937-2308085
Length = 1022
Score = 37.1 bits (82), Expect = 0.015
Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)
Frame = +1
Query: 463 EPVKQYSFILDPFQKEAI-LCIDNLQSVLV-SAHTSAGKTVVAEYAIALSLKNKQRVIYT 636
E +K+ + D Q +AI L ++N + VL+ GKT + Y IA +++ +RV+ T
Sbjct: 537 ELLKKNKYDFDASQLKAITLGLNNKRPVLIIQGPPGTGKTGLLSYLIACAVRKGERVLVT 596
Query: 637 TPIKALSNQKYREFSEEFHDVGLITGDVPINPSAS 741
P A + + S+ D + I+PS +
Sbjct: 597 APSNAAVDNMVEKLSDTGLDTVRVGNPARISPSVA 631
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 33.9 bits (74), Expect = 0.14
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 14/78 (17%)
Frame = +1
Query: 535 QSVLVSAHTSAGKTVVAEYAIALSLK----------NKQRVIYTTPIKALSNQKYREFSE 684
+++LV A T AGKT +A A+ +K N+ +++Y P+KAL+ + FS
Sbjct: 451 ENILVCAPTGAGKTNIAMIAVLHEVKQHFRDGILHKNEFKIVYVAPMKALAAEVTSTFSR 510
Query: 685 EFHDVGLI----TGDVPI 726
+ L+ TGD+ +
Sbjct: 511 RLSPLNLVVRELTGDMQL 528
>08_02_1517 + 27642361-27643218
Length = 285
Score = 31.9 bits (69), Expect = 0.56
Identities = 13/37 (35%), Positives = 24/37 (64%)
Frame = +1
Query: 187 SCQMLKMLKNQTWKS*LLLEISVHMMTSSTLIPLYQK 297
SC+++K+L + +LEIS H+++ T++P Y K
Sbjct: 195 SCRVVKLLAEARETAFSMLEISSHLLSKQTVMPSYSK 231
>01_01_1165 -
9267891-9268145,9268395-9268510,9268991-9269127,
9269645-9269808,9269892-9269972,9270783-9270962,
9271489-9271929,9273234-9273344,9274355-9274463,
9274618-9274643,9274823-9274903,9275013-9275211,
9275374-9275449,9275553-9275769,9276117-9276155,
9276684-9276783,9276962-9277084,9277171-9277895
Length = 1059
Score = 28.7 bits (61), Expect = 5.2
Identities = 17/40 (42%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
Frame = +1
Query: 466 PVKQYSFILDPFQKEAILCIDNL-QSVLVSAHTSAGKTVV 582
P + Y I DP + +LC L +SVL +A +AGKTV+
Sbjct: 12 PAQDYPTI-DPTSFDVVLCGTGLPESVLAAACAAAGKTVL 50
>11_01_0805 - 7166265-7166759
Length = 164
Score = 27.9 bits (59), Expect = 9.2
Identities = 21/81 (25%), Positives = 33/81 (40%), Gaps = 1/81 (1%)
Frame = +1
Query: 358 QSRIVIHTLETHEGCTHEVAIPP-NQEYAPLLPLTTEPVKQYSFILDPFQKEAILCIDNL 534
+ R+ +H + H +P E+ LL P S L P+ A C+ N+
Sbjct: 46 RGRLGVHNPPAFKPTPHRPKLPTIRPEHPRLLAGFASPPSPPS--LSPWCSGAGQCVQNM 103
Query: 535 QSVLVSAHTSAGKTVVAEYAI 597
Q L + TSA T+ E +
Sbjct: 104 QDELPPSPTSASSTLAEEVVV 124
>02_04_0589 -
24117688-24119282,24119881-24119908,24120004-24120089,
24120196-24120220,24121188-24121326,24122344-24122567,
24122674-24122691
Length = 704
Score = 27.9 bits (59), Expect = 9.2
Identities = 14/50 (28%), Positives = 23/50 (46%)
Frame = +1
Query: 277 LIPLYQKKPREEEEDSELITDINVDLLQSRIVIHTLETHEGCTHEVAIPP 426
++ Y++ PR D+E I + + RIV L+ E H V + P
Sbjct: 340 MLGTYRRVPRRVSVDTERCVPIGRHVEKQRIVAFLLKEDEAAAHVVGVLP 389
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,960,325
Number of Sequences: 37544
Number of extensions: 327446
Number of successful extensions: 928
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 924
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2004270760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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