Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26c10
(657 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr 2|... 29 0.78
SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr 1|||Ma... 28 1.4
SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr 2|||M... 25 7.3
SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 7.3
SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces pomb... 25 7.3
SPAC3F10.10c |map3||pheromone M-factor receptor |Schizosaccharom... 25 9.6
SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc... 25 9.6
SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces pombe... 25 9.6
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 9.6
SPAC24C9.12c |||glycine hydroxymethyltransferase |Schizosaccharo... 25 9.6
>SPBC32F12.06 |pch1||cyclin Pch1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 342
Score = 28.7 bits (61), Expect = 0.78
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 486 STISFYFHSFFLRFISVYNIKYYHL 412
+T + YFH F+LRF S+ N YY +
Sbjct: 66 ATANIYFHRFYLRF-SLKNYHYYEV 89
>SPAC22F3.13 |tsc1||hamartin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 899
Score = 27.9 bits (59), Expect = 1.4
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Frame = +1
Query: 409 LKMIIFYIVYRNKSQKKGMEIERNCAS*LHVQKACLTHTVKQLYKIAQ*NKHKQSNKR-Q 585
LK I+FYI+ + + G ++ R CA + + + K + + +Q N+ +
Sbjct: 115 LKSILFYILIFHDEDEWGGDLRRECAE-ETITRLVDLYVSKAIENLGDVESQEQRNQTIE 173
Query: 586 VLINIYTKYNV 618
L+N+ Y +
Sbjct: 174 CLVNVLVHYGI 184
>SPBC887.12 |||P-type ATPase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1258
Score = 25.4 bits (53), Expect = 7.3
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 1/44 (2%)
Frame = +1
Query: 526 VKQLYKIAQ*N-KHKQSNKRQVLINIYTKYNVIENSYLTCIKYS 654
+K L+K + K + RQ+++N Y+ + + N+ TC KYS
Sbjct: 126 IKNLFKKEKKQVKPEDLGPRQIILNDYSANHFLHNAVSTC-KYS 168
>SPAC17A2.11 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 217
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +2
Query: 23 LIARQIVHFSYYFCVFYNSYSYLSFTFVVLVVSP--STFLSYN 145
+++ + H S+ + +S+LSF + ++ P S FLS N
Sbjct: 165 ILSHSLFHISHLISFHFLFFSFLSFPLLSFILFPCFSLFLSSN 207
>SPAC31G5.21 |||human family 32A homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 118
Score = 25.4 bits (53), Expect = 7.3
Identities = 18/70 (25%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Frame = -2
Query: 212 SAISSRGYSGFTLTGGRDQGALHYMTEKLK--ETPLALQK*SSSKNMNYKTHKNSRKNVQ 39
S + G S + + +D + MTE K E+ + +KN KTHK+
Sbjct: 41 SPLEENGVSTYQMLRSKDTDSAMPMTEAQKHFESVQEQRLLQKAKNERLKTHKDRIDEYN 100
Query: 38 FVARSAAAHF 9
+ S + HF
Sbjct: 101 RLLESQSEHF 110
>SPAC3F10.10c |map3||pheromone M-factor receptor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 365
Score = 25.0 bits (52), Expect = 9.6
Identities = 15/55 (27%), Positives = 24/55 (43%)
Frame = +2
Query: 8 QNGRPLIARQIVHFSYYFCVFYNSYSYLSFTFVVLVVSPSTFLSYNGELLDLAHQ 172
Q L +++ + VF+ Y L+ VV FL +N EL++ HQ
Sbjct: 194 QRDSQLTSKRFLRLLCLAAVFFLGYFPLTIFMVVANGKLQQFLPFNHELVEAWHQ 248
>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1233
Score = 25.0 bits (52), Expect = 9.6
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = -1
Query: 477 SFYFHSFFLRFISVYNIKYYHLQLKDVLS 391
SF H F L+F S I+Y H+ K V++
Sbjct: 272 SFSLHFFALQFFSTSLIQYTHICRKCVIT 300
>SPAC14C4.10c |||Nudix family hydrolase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 329
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = -1
Query: 471 YFHSFFLRFISVYNIKYYHLQLKDV 397
YF + LRFI+ + ++Y L+L V
Sbjct: 259 YFQHYDLRFIASFFTQFYRLRLHQV 283
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.0 bits (52), Expect = 9.6
Identities = 9/26 (34%), Positives = 17/26 (65%)
Frame = +2
Query: 233 KSVLNESITSLPTNNYDRSATSDSTQ 310
KS ++ S+T +P++NY R S + +
Sbjct: 371 KSGIDSSVTGMPSDNYARVVESSTAE 396
>SPAC24C9.12c |||glycine hydroxymethyltransferase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 467
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 8/33 (24%)
Frame = +1
Query: 262 STHKQLRS--------QRHLRFHPGRGNPLYAD 336
+THK LR +R LR H +GNP+Y D
Sbjct: 240 TTHKSLRGPRGAMIFFRRGLRKHDKKGNPIYYD 272
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,796,813
Number of Sequences: 5004
Number of extensions: 58352
Number of successful extensions: 186
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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