Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26c10
         (657 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0923 - 7761383-7761549,7761849-7762086,7762962-7763028,776...    29   3.3  
03_05_0045 - 20220955-20221046,20221599-20221641,20221715-202217...    29   3.3  
10_07_0072 + 12607920-12608229,12609205-12609420,12610216-126103...    28   7.5  
07_03_1754 - 29226516-29226974,29227012-29228430                       28   7.5  
03_02_0640 - 10058828-10058971,10059066-10059201,10059512-100595...    28   7.5  
12_02_0399 - 18600444-18600591,18600626-18601656                       27   9.9  
07_01_0022 - 146406-146498,146616-146693,146967-147020,147729-14...    27   9.9  
01_06_0772 - 31864564-31864653,31864733-31864816,31865547-318656...    27   9.9  

>07_01_0923 -
           7761383-7761549,7761849-7762086,7762962-7763028,
           7763784-7763974
          Length = 220

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 204 IFEGLFWLYPDWWARSRSS 148
           +F+G  W + ++WARSRSS
Sbjct: 102 VFKGQHWFHINFWARSRSS 120


>03_05_0045 -
           20220955-20221046,20221599-20221641,20221715-20221792,
           20222401-20222454,20222766-20222829,20222915-20222960,
           20223049-20223121,20223530-20223601,20224023-20224075,
           20224149-20224239,20226459-20226650
          Length = 285

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = -2

Query: 275 CLWVDLLLTRS-ILTFVTQVFLSAISSRGYSGFTLTGGR 162
           C+W+ L    S +L  V+++F+S +S     GF + GGR
Sbjct: 138 CIWIYLGTNDSPLLEPVSKIFISVVSFLALLGFLIYGGR 176


>10_07_0072 +
           12607920-12608229,12609205-12609420,12610216-12610367,
           12611554-12611833,12612037-12612239
          Length = 386

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = +1

Query: 223 CVTKVS-IERVNNKSTHKQLRSQRHLRFHPGRGNPLYADCAGPV 351
           C+T+ + +  ++N+   + L   R  R HPG     YAD  GPV
Sbjct: 268 CITRFNDLAELHNRELQRALHELR--RAHPGATAVRYADLYGPV 309


>07_03_1754 - 29226516-29226974,29227012-29228430
          Length = 625

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 12/33 (36%), Positives = 17/33 (51%)
 Frame = -2

Query: 380 TPLAPRFTIVTGPAQSAYRGFPRPGWNRRWRCD 282
           +PL+P  TIV       Y  + RPG +  W+ D
Sbjct: 106 SPLSPDCTIVFSTFMDTYLAYTRPGEDDWWQLD 138


>03_02_0640 -
           10058828-10058971,10059066-10059201,10059512-10059590,
           10060861-10060927,10061014-10061100,10061474-10061567,
           10061663-10061749,10062267-10062328,10062485-10062584,
           10062729-10062827,10062969-10063033,10063617-10063694,
           10063787-10063873,10064383-10064466,10064860-10064955,
           10065045-10065122,10066049-10066139,10066224-10066315,
           10066433-10066560,10067421-10067495,10067670-10067850
          Length = 669

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +2

Query: 20  PLIARQIVHFSYYFCVFYNSYSYLS 94
           PL+   I +  Y+ C+F+ SY Y S
Sbjct: 222 PLVQGNIQNLRYFHCLFFYSYLYFS 246


>12_02_0399 - 18600444-18600591,18600626-18601656
          Length = 392

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 19/51 (37%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
 Frame = +2

Query: 251 SITSLPTNNYDRSATSDSTQVAEIPCMRTAQDRSLW*T-LGRGVSYIQLRT 400
           SI    T   DRS  S    V EIP +  AQ  ++W T  GRG   ++  T
Sbjct: 65  SIVVQKTKRVDRSGESSHAVVEEIP-LEGAQAENVWRTEQGRGEEVVEGNT 114


>07_01_0022 -
           146406-146498,146616-146693,146967-147020,147729-147792,
           147900-148018,148207-148278,148544-148596,148746-148836,
           148956-149099
          Length = 255

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 12/39 (30%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -2

Query: 275 CLWVDLLLTRS-ILTFVTQVFLSAISSRGYSGFTLTGGR 162
           C+WV L +  + ++  V+++F+  +S     GF++ GGR
Sbjct: 122 CIWVYLGINDNPLVELVSKIFIVVVSFVALLGFSVYGGR 160


>01_06_0772 -
           31864564-31864653,31864733-31864816,31865547-31865603,
           31865700-31865828,31866704-31866790,31866856-31866933,
           31867150-31867306,31868000-31868141,31868835-31868986,
           31869118-31869371,31869819-31869896
          Length = 435

 Score = 27.5 bits (58), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -1

Query: 240 TDFCNTGFPICHIFEGLFW 184
           T F  + F + +IFEG+FW
Sbjct: 191 TVFAQSSFTVANIFEGMFW 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,248,473
Number of Sequences: 37544
Number of extensions: 344142
Number of successful extensions: 791
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 791
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)