Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26c08
         (699 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23H4.06 |gln1||glutamate-ammonia ligase Gln1|Schizosaccharom...   140   2e-34
SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9 |Schizosacchar...    29   0.64 
SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein Ucp7|Schizosaccha...    27   2.6  
SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces pom...    27   3.4  
SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|...    26   6.0  
SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-tr...    26   6.0  
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual    25   7.9  

>SPAC23H4.06 |gln1||glutamate-ammonia ligase
           Gln1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 359

 Score =  140 bits (339), Expect = 2e-34
 Identities = 74/159 (46%), Positives = 95/159 (59%), Gaps = 1/159 (0%)
 Frame = +3

Query: 225 VLSKT-LLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGS 401
           +LSK  +L++Y DLP    K++A YIWIDG   HLR K  TL+  P +   L +WNFDGS
Sbjct: 9   LLSKAAILNKYADLPQNG-KVMAEYIWIDGFN-HLRSKTMTLDAKPSSIDQLRVWNFDGS 66

Query: 402 STNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYDKCK 581
           ST QA G+NSDT L P A+Y DPFRRG++ILV+   Y  +  P   N+R +C +  +K  
Sbjct: 67  STGQAPGNNSDTLLKPVAMYNDPFRRGDNILVLAACYTADGSPNGFNHRDACAKLLEKHA 126

Query: 582 DDEPWFGIEQEYILLDSDLRXXXXXXXXXXXXXXXYYCG 698
           D E WFGIEQEY +LD   R               +YCG
Sbjct: 127 DKETWFGIEQEYTMLDYYDRPFGWPKGGFPGPQGPFYCG 165


>SPAC2E1P5.05 |||U3 snoRNP-associated protein Rrp9
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 524

 Score = 29.1 bits (62), Expect = 0.64
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -2

Query: 347 QGAIFAPQVFARAVDPNVGGENLVSRQWKIIVSTQ 243
           Q  IF     AR    +VGG +  SR WKI+  +Q
Sbjct: 292 QDVIFGVDALARERCVSVGGRDRTSRLWKIVEESQ 326


>SPAC17A5.12 |ucp7||UBA/TPR/DNAJ domain protein
           Ucp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 697

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 159 HTKIEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPA 275
           H KIE+N + +S P ++ S    L    L  +  + LPA
Sbjct: 116 HDKIEENKRPISQPQVSASEKVTLKDLSLEPHQPVSLPA 154


>SPBC405.02c ||SPBC4C3.01|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 447

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 17/69 (24%), Positives = 32/69 (46%)
 Frame = +3

Query: 168 IEDNPKILSGPVLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTL 347
           ++DN  + S     +S N+ LS +    +  +P+PA  +  T +  D +    R    T 
Sbjct: 295 LQDNASLTSQGSNLSSQNSGLSSSSSGIFGRMPIPAQSLDTTMLRTDSNSNIRRA---TT 351

Query: 348 NFIPKAPKD 374
           +FI  + K+
Sbjct: 352 SFIANSEKE 360


>SPCC1450.07c |||D-amino acid oxidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +3

Query: 399 SSTNQADGHNSDTYLVPRAI 458
           + T   +G NSDTY++PR +
Sbjct: 219 TETRILNGKNSDTYIIPRPL 238


>SPBC28F2.03 |ppi1|cyp2|cyclophilin family peptidyl-prolyl cis-trans
           isomerase Cyp2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 162

 Score = 25.8 bits (54), Expect = 6.0
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 7/63 (11%)
 Frame = -2

Query: 620 NIFLFYPKPGLIILAFVVS-------FLTTDAIVALCWLHVVFIRITHNEDVISSTEWIL 462
           N  L + KPGL+ +A           F+TT     L   HVVF  +T   DV+   E + 
Sbjct: 85  NFALKHNKPGLLSMANAGPNTNGSQFFITTVVTPWLDGKHVVFGEVTEGMDVVKKVESLG 144

Query: 461 VNS 453
            NS
Sbjct: 145 SNS 147


>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1496

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
 Frame = +3

Query: 357  PKAPKDLPIWNFDGSSTNQADGH-NSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPT 533
            PKA K   I +F  S  NQ +GH    +  V  ++    F R     + CD+  YN+E  
Sbjct: 875  PKANKAGTITDFSRSVNNQRNGHLTVGSDAVCLSLGDSQFHR-----LSCDSVGYNIEVK 929

Query: 534  ESNNRISCQ 560
                ++S Q
Sbjct: 930  RYVKKVSGQ 938


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,059,031
Number of Sequences: 5004
Number of extensions: 66829
Number of successful extensions: 189
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 181
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 188
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)