Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmte26c08
(699 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 136 2e-32
04_04_1445 - 33658355-33658417,33658536-33658669,33659056-336591... 136 2e-32
03_02_0210 - 6425708-6425863,6425955-6426114,6426204-6426295,642... 127 1e-29
03_05_0899 - 28619081-28619208,28619309-28619369,28619936-286200... 111 7e-25
01_05_0006 + 17008799-17009417,17010035-17010162,17010425-170106... 29 3.5
01_01_0307 + 2513678-2513772,2514064-2514682 29 3.5
06_01_0370 - 2660569-2661591,2661685-2662260 28 8.2
02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,329... 28 8.2
01_05_0714 + 24555494-24555637,24555884-24556071,24556195-245562... 28 8.2
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 136 bits (329), Expect = 2e-32
Identities = 68/144 (47%), Positives = 86/144 (59%), Gaps = 3/144 (2%)
Frame = +3
Query: 276 DKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRA 455
+KI+A YIWI GSG LR K RTL+ P LP WN+DGSST QA G +S+ L P+A
Sbjct: 17 EKIIAEYIWIGGSGMDLRSKARTLSGPVTDPSKLPKWNYDGSSTGQAPGEDSEVILYPQA 76
Query: 456 IYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQEAYD--KCKDDEPWFGIEQEYILLD 629
I+KDPFR+GN+ILVMCD Y EP +N R + + + + +EPW+GIEQEY LL
Sbjct: 77 IFKDPFRKGNNILVMCDCYTPAGEPIPTNKRHNAAKIFSSPEVASEEPWYGIEQEYTLLQ 136
Query: 630 SDLR-XXXXXXXXXXXXXXXYYCG 698
D+ YYCG
Sbjct: 137 KDINWPLGWPVGGFPGPQGPYYCG 160
>04_04_1445 - 33658355-33658417,33658536-33658669,33659056-33659116,
33659197-33659356,33660032-33660081,33662237-33662290,
33662630-33662704,33662821-33662949,33663065-33663152,
33663266-33663372,33663513-33663561,33663657-33663760,
33663941-33663980,33664409-33664659,33664674-33664686,
33665846-33666355,33666437-33667657,33667973-33668221,
33668305-33668531
Length = 1194
Score = 136 bits (328), Expect = 2e-32
Identities = 69/148 (46%), Positives = 88/148 (59%), Gaps = 2/148 (1%)
Frame = +3
Query: 201 VLTNSPNAVLSKTLLSRYNDLPLPADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLP 380
V T + V L + P DKI+A YIW+ G+G LR K RT++ + P +LP
Sbjct: 792 VSTETTGVVTRMEQLLNMDTTPF-TDKIIAEYIWVGGTGIDLRSKSRTISKPVEDPSELP 850
Query: 381 IWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQ 560
WN+DGSST QA G +S+ L P+AI+KDPFR GN+ILVMCDTY EP +N R
Sbjct: 851 KWNYDGSSTGQAPGEDSEVILYPQAIFKDPFRGGNNILVMCDTYTPAGEPIPTNKRNRAA 910
Query: 561 EAYD--KCKDDEPWFGIEQEYILLDSDL 638
+ + K PWFGIEQEY LL D+
Sbjct: 911 QVFSDPKVVSQVPWFGIEQEYTLLQRDV 938
>03_02_0210 -
6425708-6425863,6425955-6426114,6426204-6426295,
6426490-6426564,6426701-6426829,6427312-6427375,
6427761-6427867,6428795-6428843,6428955-6429058,
6429166-6429205,6429492-6429565
Length = 349
Score = 127 bits (306), Expect = 1e-29
Identities = 62/124 (50%), Positives = 80/124 (64%), Gaps = 2/124 (1%)
Frame = +3
Query: 273 ADKILATYIWIDGSGEHLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPR 452
+DKI+A YIW+ GSG LR K RT+ LP WN+DGSST QA G +S+ L P+
Sbjct: 16 SDKIIAEYIWVGGSGIDLRSKARTVKGPITDVSQLPKWNYDGSSTGQAPGEDSEVILYPQ 75
Query: 453 AIYKDPFRRGNHILVMCDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILL 626
AI+KDPFRRG++ILVMCD Y EP +N R S + ++ + PW+GIEQEY LL
Sbjct: 76 AIFKDPFRRGDNILVMCDCYTPQGEPIPTNKRHSAAKIFSHPDVVAEVPWYGIEQEYTLL 135
Query: 627 DSDL 638
D+
Sbjct: 136 QKDV 139
>03_05_0899 -
28619081-28619208,28619309-28619369,28619936-28620095,
28620200-28620237,28620341-28620394,28620562-28620636,
28620744-28620872,28621172-28621259,28621340-28621446,
28621547-28621595,28621683-28621786,28622019-28622133,
28622517-28622596
Length = 395
Score = 111 bits (266), Expect = 7e-25
Identities = 53/108 (49%), Positives = 70/108 (64%), Gaps = 2/108 (1%)
Frame = +3
Query: 321 HLRCKDRTLNFIPKAPKDLPIWNFDGSSTNQADGHNSDTYLVPRAIYKDPFRRGNHILVM 500
HL+ + TL+ P LP WNFDGSST QA G +S+ L P+AI++DPFR+G +ILVM
Sbjct: 59 HLKEVNHTLSGPVDDPSKLPKWNFDGSSTGQATGDDSEVILHPQAIFRDPFRKGKNILVM 118
Query: 501 CDTYKYNMEPTESNNRISCQE--AYDKCKDDEPWFGIEQEYILLDSDL 638
CD Y N EP +NNR + ++ K +EPW+GIEQEY LL +
Sbjct: 119 CDCYAPNGEPIPTNNRYNAARIFSHPDVKAEEPWYGIEQEYTLLQKHI 166
>01_05_0006 +
17008799-17009417,17010035-17010162,17010425-17010650,
17010792-17010925,17010988-17011161,17011234-17012238
Length = 761
Score = 29.1 bits (62), Expect = 3.5
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -3
Query: 289 ARILSAGSGRSLYRLSSVLDSTAFGELVKTGPDR 188
AR L +LY SS+LD + GEL++ PDR
Sbjct: 553 ARDLDPSQTSTLYCQSSLLDKSENGELIEMYPDR 586
>01_01_0307 + 2513678-2513772,2514064-2514682
Length = 237
Score = 29.1 bits (62), Expect = 3.5
Identities = 16/36 (44%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Frame = -2
Query: 170 YFGMRCISHFETGKAR--LCLEMFPRCEC*ILRENV 69
Y CISHF KAR LC E +P C I+ + V
Sbjct: 195 YRTQNCISHFLANKARAKLCTEFWPDETCNIISQFV 230
>06_01_0370 - 2660569-2661591,2661685-2662260
Length = 532
Score = 27.9 bits (59), Expect = 8.2
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 2/62 (3%)
Frame = -3
Query: 289 ARILSAGSGRSLYRLSSVLDS--TAFGELVKTGPDRIFGLSSILVCAVSAILKQVRHDYV 116
A + GS S+Y+ + D A LVKT PD G L+ + AIL ++RHD++
Sbjct: 219 ANEIGRGSSGSVYK-GRLRDGREVAIKSLVKTSPDH--GREESLMRGL-AILSRLRHDHI 274
Query: 115 LK 110
++
Sbjct: 275 VR 276
>02_01_0459 + 3298780-3298788,3298900-3299037,3299174-3299207,
3299528-3299531,3299814-3299949,3300034-3300090,
3301689-3301786,3301876-3301947,3302056-3302228,
3302552-3302698,3303113-3303336,3305300-3305306,
3305634-3305800,3306033-3306068,3306787-3307004,
3307115-3307172,3307761-3307842,3308045-3308207,
3308594-3308598,3308700-3308885,3308969-3309548,
3309642-3309774,3309880-3309948,3310184-3310395,
3310654-3310891,3311228-3311386,3311501-3311926,
3312010-3312447,3312593-3312712,3312784-3313266,
3313471-3314009,3314178-3314667,3314836-3314904,
3315735-3315839,3315940-3316158,3316254-3316508,
3316602-3316651,3317175-3317284,3317372-3317454,
3317560-3317772,3317870-3318040
Length = 2391
Score = 27.9 bits (59), Expect = 8.2
Identities = 17/63 (26%), Positives = 29/63 (46%)
Frame = +1
Query: 430 LIPTSYLVLFTRIHSVEEITSSLCVIRINTTWSQQRATIASVVKKLTTNARMMSPGLG*N 609
+I TSY ++ I +E + + CV+ R+ I S VK+L R++ G
Sbjct: 1908 VIITSYDIIRKDIDFLENVFWNYCVLDEGHIIKNSRSKITSAVKQLKAQHRLILSGTPIQ 1967
Query: 610 RNI 618
N+
Sbjct: 1968 NNV 1970
>01_05_0714 +
24555494-24555637,24555884-24556071,24556195-24556280,
24556359-24556461,24556798-24557000,24557077-24557681,
24557784-24557918,24558040-24558067,24559517-24559596,
24559873-24559975,24560553-24560635,24560915-24561017,
24561596-24561720,24562001-24562103,24562647-24562726,
24563322-24563429,24563521-24563565
Length = 773
Score = 27.9 bits (59), Expect = 8.2
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 16 PPREAIETFYAPTKPFVNTFSRNIQHSHRGNISR 117
PP + T + P P +T+ +N HRGN +
Sbjct: 630 PPEDTDNTVHTPEIPPEDTYPQNQSEIHRGNTEK 663
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,717,151
Number of Sequences: 37544
Number of extensions: 465003
Number of successful extensions: 1241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1237
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -