Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26c05
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces pom...    42   1e-04
SPBC23G7.10c |||NADH-dependent flavin oxidoreductase |Schizosacc...    31   0.16 
SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual     26   4.7  
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic...    26   6.1  
SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr 1...    25   8.1  

>SPCC16C4.16c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 161

 Score = 41.5 bits (93), Expect = 1e-04
 Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 3/48 (6%)
 Frame = +1

Query: 424 IRFDTIHLNGVDGLTTKEIFQYLEDYKPLS---LEWIDDTSCNVVCQD 558
           +R   +HL GVD L+ +++  ++  Y P S   +EWI+D  CNVV  D
Sbjct: 33  LRKTALHLAGVDNLSEEQVKGFISAYAPESQCTIEWINDNECNVVYAD 80


>SPBC23G7.10c |||NADH-dependent flavin oxidoreductase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 395

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 15/46 (32%), Positives = 23/46 (50%)
 Frame = +1

Query: 325 RFGLNLTGTHTITQKQIDELYENCGIQSGNERHIRFDTIHLNGVDG 462
           R+  N    H +T+KQ DEL +   + +     I FD I ++G  G
Sbjct: 167 RWDENHAQPHKLTEKQYDELVDKFVVAAKRAVEIGFDVIEIHGAHG 212


>SPAC9.07c |||GTPase Rbg1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 366

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 16/63 (25%), Positives = 29/63 (46%)
 Frame = +1

Query: 244 VFKAEKNGLVVQKLEKVDAAKLDERAKRFGLNLTGTHTITQKQIDELYENCGIQSGNERH 423
           + + E  G  + +L K     + ++ +R G+N+T T  +T   +DE+   C     N   
Sbjct: 159 IIEEELEGFGI-RLNKEPPNIVFKKKERGGINITNTVPLTHIDLDEIRAVCSEYRVNSAD 217

Query: 424 IRF 432
           I F
Sbjct: 218 IAF 220


>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
            subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1729

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 13/34 (38%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = -2

Query: 462  PIHSI*MNGIKTYVPF-IATLYTTIFIKFIYLLL 364
            PI++I  N ++  +    ATLY ++FI F  LL+
Sbjct: 1660 PIYTIRQNKLRRQIVLRYATLYFSLFIAFFVLLI 1693


>SPAC24H6.04 |hxk1||hexokinase 1 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 484

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = +1

Query: 280 KLEKVDAAKLDERAKRFGLNLTGTHTITQKQIDELYENCGIQSGN 414
           KL K     LDE  ++F +     H +T + + ELY+      G+
Sbjct: 22  KLNKTLQDHLDELEEQFTIPTELLHRVTDRFVSELYKGLTTNPGD 66


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,633,749
Number of Sequences: 5004
Number of extensions: 48754
Number of successful extensions: 120
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 119
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 119
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)