Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26c05
         (715 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225     30   1.6  
08_02_0860 + 21970888-21971833,21973400-21974127                       29   3.7  
03_02_0504 - 8976973-8979414                                           28   6.4  
08_02_0969 - 23126389-23126670,23126764-23126947,23127017-231278...    28   8.5  

>04_04_1481 - 33894175-33894537,33894618-33894739,33894841-33895225
          Length = 289

 Score = 30.3 bits (65), Expect = 1.6
 Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 7/83 (8%)
 Frame = +1

Query: 277 QKLEKVDAAKLDERAKRFGLNL---TGTH-TITQKQID---ELYENCGIQSGNERHIRFD 435
           Q+ ++V     +E A R G+ +   +GT  T T +QI    ELY +CGI+S N   I+  
Sbjct: 7   QQRQQVGGGGGEEVAGRGGVPVCRPSGTRWTPTTEQIKILRELYYSCGIRSPNSEQIQRI 66

Query: 436 TIHLNGVDGLTTKEIFQYLEDYK 504
              L     +  K +F + +++K
Sbjct: 67  AAMLRQYGRIEGKNVFYWFQNHK 89


>08_02_0860 + 21970888-21971833,21973400-21974127
          Length = 557

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 13/28 (46%), Positives = 20/28 (71%)
 Frame = -1

Query: 535 MCHQSIPMKVVYNLLSIEIFPLLSAHPL 452
           MC +SIP  ++  LLS+ +F L +AHP+
Sbjct: 4   MCSRSIPQLIL--LLSLTVFLLANAHPM 29


>03_02_0504 - 8976973-8979414
          Length = 813

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 11/25 (44%), Positives = 17/25 (68%), Gaps = 2/25 (8%)
 Frame = +1

Query: 604 KDGNLSAVISDKN--HHWRQGVHHP 672
           KD NL+ + + +N   HW++GV HP
Sbjct: 194 KDSNLAPLFAVENPLEHWQRGVRHP 218


>08_02_0969 -
           23126389-23126670,23126764-23126947,23127017-23127834,
           23127953-23128642
          Length = 657

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/29 (44%), Positives = 20/29 (68%), Gaps = 2/29 (6%)
 Frame = +1

Query: 592 SHEIKDGNLSAV-ISDKN-HHWRQGVHHP 672
           + +I+D  L +V IS++   HW+QGV HP
Sbjct: 190 TRQIRDPQLESVTISERPPEHWQQGVKHP 218


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,473,686
Number of Sequences: 37544
Number of extensions: 268025
Number of successful extensions: 589
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)