Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmte26c02
         (704 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0128 - 12848227-12848619,12848699-12848827,12849108-128492...    29   3.6  
07_03_1475 + 26791214-26791490,26793507-26793706,26793866-267945...    29   3.6  
10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,938...    29   4.8  
06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877     29   4.8  

>08_02_0128 -
           12848227-12848619,12848699-12848827,12849108-12849279,
           12849336-12849488,12850017-12850271,12850846-12851000,
           12853319-12853456,12853545-12853715,12853878-12854063,
           12854169-12854290,12855617-12855752,12856108-12856203,
           12856294-12856356,12856846-12856993,12857324-12857514,
           12857916-12857989,12858039-12858171,12858299-12858460,
           12861649-12861745,12861866-12861962,12863994-12864141
          Length = 1072

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 2/52 (3%)
 Frame = +3

Query: 486 NKVANLLDKYQK--LGCNMSIKLHFLDSHVDFFPDNLGDYSKEQGERFHQDI 635
           N +AN  DK +K  L   +S +LH+L     F P    ++ +E G + H  +
Sbjct: 200 NLIANAADKLEKETLNTELSFRLHYLTIQFFFVP----NFMEEYGAKLHTSV 247


>07_03_1475 +
           26791214-26791490,26793507-26793706,26793866-26794507,
           26794888-26795038,26795434-26795583,26795675-26795847,
           26796088-26796195
          Length = 566

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 18/62 (29%), Positives = 29/62 (46%)
 Frame = -2

Query: 385 SSSAIKDLICGPSNTPLIFASDNLGIFLHRYSKVALFLSNALTNCFIIPSLI*SGGSKIF 206
           SS  + +   GP ++      + +G+ LH  S  A  + N LT   + P+L     S+I 
Sbjct: 320 SSRCLNEAAEGPLSSEEEICGNIMGLMLHGISTCANLIGNILTRLALYPNLQCQLHSEIV 379

Query: 205 SG 200
           SG
Sbjct: 380 SG 381


>10_06_0002 + 9382559-9382937,9383008-9383180,9386752-9386901,
            9387180-9387325,9387416-9387572,9387720-9387778,
            9388204-9388360,9389001-9389150,9389280-9389416,
            9390071-9390217,9390292-9390393,9390742-9390799,
            9391997-9392034,9392124-9392250,9392320-9392493,
            9393125-9393256,9393940-9394049,9394752-9394812,
            9395036-9395213,9395326-9395531,9395796-9395915,
            9396496-9396594,9396983-9397204,9397482-9397621,
            9397741-9397852,9398021-9398071,9398151-9398240,
            9398397-9398567,9398663-9398815,9399774-9399950,
            9400045-9400182,9400295-9400365,9400739-9400838,
            9401324-9401380,9401469-9401525,9401619-9401699,
            9401782-9401864,9401975-9402110
          Length = 1632

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 15/53 (28%), Positives = 27/53 (50%)
 Frame = +3

Query: 192  LISPEKILLPPLHIKLGMMKQFVKALDKNNATFEYLCKKIPRLSDAKIKGVFD 350
            ++   KI+      +   +K  V++L KNN++ EY      + SDA +K + D
Sbjct: 1075 MLRSSKIMTAEAERENSNLKNLVESLSKNNSSLEYELTSARKGSDATMKKLKD 1127


>06_02_0158 + 12410872-12411183,12413512-12413604,12413692-12413877
          Length = 196

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/14 (78%), Positives = 12/14 (85%)
 Frame = -3

Query: 567 HVNLESGVLCSYYT 526
           H  L+SGVLCSYYT
Sbjct: 106 HKQLKSGVLCSYYT 119


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,130,937
Number of Sequences: 37544
Number of extensions: 333659
Number of successful extensions: 812
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 812
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1815633512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)